BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15755.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493310 jgi|Araly1|493310|fgenesh2_kg.7__2743__AT4G15755.1 800 0.0
> Ahg493310 jgi|Araly1|493310|fgenesh2_kg.7__2743__AT4G15755.1
Length=827
Score = 800 bits (433), Expect = 0.0
Identities = 586/658 (89%), Gaps = 17/658 (3%)
Strand=Plus/Plus
Query 1 ATGGCGAATCTAACTCTAGAGCTAAACATCAACTCCGCAAGAAACCTTTTAAATGTCAAT 60
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1 ATGGCGAATCTAACACTAGAGCTAAACATCAACTCCGCAAGTAACCTTTTGAATGTCAAC 60
Query 61 CTCATCACTAAAATGAACGTTTTCACTGCCATCACCATCAACGGCGAGAATACTCGAAAG 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCATCACCAAAATGAATGTTTTCACTGCCATCACCATCAACGGCGAGAATACCCGAAAG 120
Query 121 AAACAAAAGGCGAAAACCACGGTTGATCGTTATGGTGGATCTAACCCGACTTGGAATCAA 180
|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 121 AAACAAAAGGCGAAAACCGCTGTTGATCGCAATGGTGGATCTAACCCGACTTGGAATCAA 180
Query 181 ACCATCAAATTTTCCGTGGACGAGAGGTCAGCCCGTGGTGGTCATTCGTCACTTGTCATG 240
| | ||||||||||||| ||||||| | |||||||| ||||||||| ||||||| |||
Sbjct 181 ATCGTCAAATTTTCCGTTAACGAGAGCTTAGCCCGTGACGGTCATTCGACACTTGTAATG 240
Query 241 AGAGTAATCTCTCGTCGAGTCCTAGGCAACAAAGAAATCGGAAGAGTTAACATCCCGTTA 300
||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATTAATCTCCCATCGAGTCTTAGGCAACAAAGAAATCGGAAGAGTTAACATCCCGTTA 300
Query 301 CTTGAGCTCTTGAATGCAACCACACCATCATTTAACGGTGATGGTAACG--A----TCAT 354
|||||||| |||||| ||| |||||||||| |||||| ||||||||||| | |||
Sbjct 301 CTTGAGCTTTTGAATTCAATCACACCATCAATTAACGTTGATGGTAACGGTAACGGTCAG 360
Query 355 GAGATGAAACTGATGTCGTATCAGGTGAGAACTTCGTCGGGTAAACGGTCAGGTTCTTTG 414
||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 361 GAGATGAAATTGATGACGTATCAGGTGAGAACTTCGTCAGGTAAACGGTCAGGCTCTTTG 420
Query 415 TCTTTCTCGTACCGGTTTAAACCAAATGTTCCAGTGATCACTAACCGGAGTTGTGTAGAC 474
|| |||||||||||||||||| ||| | ||||| |||||||||||||||||| |||| |
Sbjct 421 TCCTTCTCGTACCGGTTTAAAACAACTTTTCCAATGATCACTAACCGGAGTTCTGTA--C 478
Query 475 TCCGCGGCACCATCTCAAATCGAGCATGCA-CCTTCGGCTCCACCCGAATTGCCAATTGA 533
| ||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 479 -C------ACCATCTCAAATCGAGCAT-CAACCTTCGGCTCCACCTGAATTGCCAATTGA 530
Query 534 GTTTCCTAAGCTGCCTCAGCCGCCGTATCTTTTGAGACATCCTTTCGCCGCCGGTTCTAG 593
||||||||||||| ||||||| ||||||||| |||||||||||||||| | ||||||||
Sbjct 531 GTTTCCTAAGCTGGCTCAGCCTCCGTATCTTCGGAGACATCCTTTCGCCACAGGTTCTAG 590
Query 594 CCGTGGTCTTCTTCCAATATCATATGGCGCTGGGATGACCGAGCAAACCGGTCACGCT 651
| ||| ||||||||||||||| ||||| |||| ||| ||||||||||||| |||||||
Sbjct 591 CGGTGATCTTCTTCCAATATCCTATGGTGCTGTGATAACCGAGCAAACCGATCACGCT 648
Score = 265 bits (143), Expect = 5e-70
Identities = 167/179 (93%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 691 CCACCACCGAGACAAGGATATGGACCGTACGGTTATGTGTCGTCGGGATATGGATACGGA 750
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 649 CCACCAACGAAACAAGGATATGGACCGTACGGTTATGTGTCGTCGGGATATCGATACGGA 708
Query 751 AGTCCCTCGTATCAACAACGTAAGGAGATGGGGATTGGGCTTGGATTGGGAGCCGGACTT 810
||||| |||||||||||||| |||||||| ||| |||| |||||| |||||||||| |||
Sbjct 709 AGTCCATCGTATCAACAACGGAAGGAGATAGGGCTTGGACTTGGAGTGGGAGCCGGGCTT 768
Query 811 TTTGGTGGATTAATGGTGGGAGACATTGTGTCTGATGTTGCAAATTGTTATGATCTTTG 869
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTGGGTGGACTAATGGTGGGAGACATTGTGTCTGATGTTGCAAATTGTTATGATCTTTG 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5