BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15760.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946724 jgi|Araly1|946724|scaffold_702953.1 1862 0.0
> Ahg946724 jgi|Araly1|946724|scaffold_702953.1
Length=1242
Score = 1862 bits (1008), Expect = 0.0
Identities = 1167/1245 (94%), Gaps = 6/1245 (0%)
Strand=Plus/Plus
Query 151 CTTTAGATCTGAAAATCTCAGCTTTGAAATGGAGGAAATCGGAATAGTTATCGTCGGCGG 210
|||||||||||||||| |||||| | ||||||| |||||||| |||||||| ||||||||
Sbjct 1 CTTTAGATCTGAAAATATCAGCTATCAAATGGAAGAAATCGGCATAGTTATTGTCGGCGG 60
Query 211 CGGAATCGCTGGTCTCGCCACTTCCATTGCTCTTCATAGGAAAGGAATAAAGAGTGTGGT 270
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 61 CGGAATCGCTGGTCTCGCCACTTCCCTTGCTCTTCATAGGAAAGGGATAAAGAGTGTGGT 120
Query 271 GTTGGAGAGAGCAGAGAAAGTGAGATCGGAAGGAGCTGGAATCGGAACTCTCTCCAATGG 330
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 121 CTTGGAGAGAGCAGAGAAAGTGAGATCGGAAGGAGCTGGAATCGGAACTCTCACTAATGG 180
Query 331 TTGGAGAGCCCTTGATCAGCTTGGCGTTGGTGATCGCCTTCGTCTCAA-TTCTTC-TCTT 388
|||||| || |||||||| ||||| || |||||||| |||||||| || ||| || ||||
Sbjct 181 TTGGAGGGCTCTTGATCAACTTGGTGTCGGTGATCGTCTTCGTCT-AACTTC-TCGTCTT 238
Query 389 ATTCACAAGGCACGGACCATGTTGATTGAGAATGGaaaaaaaCGAGAATTCGTTTCAAAT 448
||||||||||||||||||||||||||||| ||||| ||||||| |||||| || ||||
Sbjct 239 ATTCACAAGGCACGGACCATGTTGATTGAAAATGGGAAAAAACAAGAATTTGTGTCAACC 298
Query 449 ATAGTAGACGAAGCTCGTTGTATTAAAAGGAACGATCTTGTTGAGGCCTTATCCGATGCC 508
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 CTCGTAGACGAAGCTCGTTGTATTAAAAGGAACGATCTTGTTGAGGCCTTAGCCGATGCT 358
Query 509 CTTCCGAAAGGAACCATCCGGTTCGGTTCTCATATTGTTTCTATTGAGCAGGACAAAACT 568
|||||| ||| ||||||||||||||||||||| ||||||||||||||| | ||||||| |
Sbjct 359 CTTCCGGAAGAAACCATCCGGTTCGGTTCTCAAATTGTTTCTATTGAGGAAGACAAAAGT 418
Query 569 ACGTTGTTTCCGGTTGTTCACTTAGCCAATGGAAATAGCATCAAAGCCAAGGTCCTGATT 628
|||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 419 ACGTCGTTTCCGGTTGTTCACTTAACCAATGGAAATACCATCAAAGCCAAGGTCTTGATT 478
Query 629 GGATGCGATGGTGCCAATTCTATCGTCAGTGATTATTTGCAGTTAAACCCGAAAAAGGCG 688
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 GGATGTGATGGTGCCAATTCTATCGTCAGTGATTATTTGCAGTTAAATCCGAAAAAGGCG 538
Query 689 TTTGCTTGTCGTGCGGTGAGAGGGTTTACTAAGTACCCAAACGGCCATGGATTTCCACAA 748
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 539 TTTGCTTGTCGGGCGGTGAGAGGGTTTACTAATTACCCAAATGGCCATGGATTTCCACAA 598
Query 749 GAGGTTCTAAGGATAAAGCAAGGAAATGTCTTAATAGGAAGGCTTCCTTTG-ACGGATAA 807
||||||||||| ||||||||||||||| ||||||| |||||| |||||||| || |||||
Sbjct 599 GAGGTTCTAAGAATAAAGCAAGGAAATATCTTAATCGGAAGGTTTCCTTTGAAC-GATAA 657
Query 808 TCAAGTCTTTTGGTTTCTAGTACATATGCAAGACAATAATCACAATGGTAAAGATCAAGA 867
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCTAGTCTTTTGGTTTCTAGTACATATGCAAGACAATAATCACAATGGTAAAGATCAAGA 717
Query 868 ATCGATTGCGAATCTGTGTCGAAAATGGGCCGATGACTTGTCTGAAGATTGGAAAGAAAT 927
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 718 ATCGATTGCGAATCTGTGTCTAAAATGGGCCGAGGACTTGTCTGAAGACTGGAAAGAAAT 777
Query 928 GGTAAAAATATGCAATGTGGAGTCATTAACACTCACACACTTAAGGTACCGAGCGCCATC 987
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 778 GGTAAAAATATGCGATGTGGAGTCATTAACACTCACACACTTAAGGTACCGTGCGCCGTC 837
Query 988 GGAAATCATGTTAGGGAAATTTCGTCGTGGGACAGTGACTGTAGCCGGCGATGCGATGCA 1047
|||||||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 838 GGAAATCATGTTTGGGAAATTTCGCCGTGGGACCGTCACTGTAGCCGGCGATGCAATGCA 897
Query 1048 CGTGATGGGTCCGTTCTTGGCACAGGGCGGCTCAGCGGCGCTAGAGGATGCGGTTGTTTT 1107
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 898 TGTGATGGGTCCGTTCTTGGCACAAGGCGGCTCAGCGGCGCTAGAGGATGCGGTTGTTTT 957
Query 1108 AGCTAGGTGTCTAGCTAGGAAAGTTGGTCCGGACCACGGAGACTTGTTAAAGGATTGTTC 1167
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 958 AGCTAGATGTCTAGCTAGGAAAGTGGGTCCGGGCCACGGAGACTTGTTAAAGGATTGTTC 1017
Query 1168 GATGAAAAACATTGAAGAAGCTATTGATGAGTATGTGGATGAACGTAGGATGAGATTACT 1227
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1018 GATGAAAAACATTGAAGAAGCTATTGATGAGTATGTGGAGGAACGTAGGATGAGATTACT 1077
Query 1228 CGGGCTTTCGGTGCAGACTTATTTGACCGGACGTTCGCTACAAACGTCATCAAAGGTTCT 1287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1078 CGGGCTTTCGGTGCAGACTTATTTGACCGGACGTTCGCTACAAACGTCATCAAAGGTTGT 1137
Query 1288 GAGGCTAATGTTTATAGCTTTGTTGTTACTTTTGTTTGGTCGTGATCAAATTCGTCATAC 1347
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1138 GAGGCTAATGTTTATAGCTTTGTTGTTACTTTTGTTTGGCCGTGATCAGATTCGTCATAC 1197
Query 1348 TAGGTACGACTGTGGCCGTCTCTAGAGATTTGATGGACAttttgt 1392
||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 1198 TAGATACGATTGTGGCCGTCTCTAGAGATTTGATGGGCACTTTGT 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5