BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15765.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355191 jgi|Araly1|355191|fgenesh1_pg.C_scaffold_7002364 1153 0.0
> Ahg355191 jgi|Araly1|355191|fgenesh1_pg.C_scaffold_7002364
Length=1227
Score = 1153 bits (624), Expect = 0.0
Identities = 722/769 (94%), Gaps = 7/769 (1%)
Strand=Plus/Plus
Query 337 GTTTTGATTGGCTGCGATGGGTCAAATTCTGTAGTCTCTAGATTTCTAGGATTAAACCCG 396
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 463 GTTTTGATTGGCTGCGATGGATCAAATTCTGTAGTCTCTAGATTTCTAGGACTAAACCCG 522
Query 397 ACTAAAGACCTCGGTTCGCGGGCCA-TCAGAGGGTTCACAAATTACCCGGACGACCATGG 455
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 523 ACTAAAGACCTCGGTTCGCGGG-CAGTCAGAGGGTTCACAAATTACCCGGACGACCATGG 581
Query 456 ATTCCGACAAGAGTTTATAAGAATCAAGATGGACAACGTCGTAAGCGGACGACTTCCTAT 515
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 582 ATTCCGGCAAGAGTTTATAAGAATCAAGATGGACAACGTCGTAAGCGGACGAATTCCTAT 641
Query 516 AACTCACAAACTCGTCTTTTGGTTTGTTGTTTTGCGAAATTGTCCCCAAGACTCAAACTT 575
||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 642 AACTCACAAACTCGTCTTTTGGTTTGTTGTTTTGCTTAACTGTCCCCAAGACTCAAGCTT 701
Query 576 CTTAAAAAATCAAGAGGATATCGCAAGATTGGCACTAGCATCAGTCCGCGAATTCTCAGA 635
|||| |||||||| |||||||||||||||| |||||||||| |||| ||||||||| ||
Sbjct 702 TTTAAGAAATCAAGCGGATATCGCAAGATTGACACTAGCATCGGTCCACGAATTCTCTGA 761
Query 636 AGAGTGGAAAGAGATGGTGAAGAATTGTGATATGGACTCTTTGTATATCAACCGTTTAAG 695
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 762 AGAGTGGAAAGAGATGGTGAAGAACTGTGATATGGACTCTTTGTATATCAACCGTTTAAG 821
Query 696 GTACCGTGCTCCTTGGGATGTTCTGTCTGGAAAATTCCGACGTGGCACCGTGACAGTTGG 755
||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||| ||
Sbjct 822 GTACCGTGCTCCTTGGGATGTTCTGTCCGGTAAATTCCGATGTGGCACTGTGACAGT-GG 880
Query 756 CCGGAGACAGTATGCACCTAATGGGCCCATTCTTAGGACAAGGATGTTCGGCTGCGCTTG 815
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 881 CCGGAGACAGTATGCACCTAATGGGTCCATTCATAGGACAAGGATGTTCGGCTGCACTTG 940
Query 816 AGGACGGTGTTGTTTTGGCTAGATGCTTGTGGAGGAAGTTAAATTTAGGTCAAGACGGTA 875
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 941 AGGACGGTGTTGTTTTGGCTAGATGCTTGTGGAGGAAGTTATCTTTAGGTCAAGACGGTA 1000
Query 876 T-AATTAATGTATCTTCCTTCTCTTCAAGGATGCAAATAGAAGAAGCAATTGATGAGTAC 934
| ||| ||||| |||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1001 TGAAT-AATGTCTCTTACTCCTCTTCAAGGATGCAAATAGAAGAAGCGATTGATGAGTAC 1059
Query 935 ATTAGGGAAAGAAGAGGTAGACTCGTGGGGCTTTCGACACAAACTTATCTTACCGGTAGT 994
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 1060 ATTAGGGAAAGAAGAGGGAGACTCGTGGGGCTTTCGACGCAAACATATCTTACCGGTAAT 1119
Query 995 TTAAT-AGCAGCTTCTTCGCCGGTTAGGAAGCTATTGCTTGTAGTTATGTTGATGATTCT 1053
||||| | ||||||||||||||||| |||| | |||||||||||| |||||||||||||
Sbjct 1120 TTAATCAA-AGCTTCTTCGCCGGTTACGAAGTTCTTGCTTGTAGTTTTGTTGATGATTCT 1178
Query 1054 GTTTCGTGATCAAATTGGTCATACTCGATATGATTGTGGCAGTCTATAA 1102
|||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1179 GTTTCGTGATCAAATTGGTCATACTCGATATGATTGTGGCCGTCTTTAA 1227
Score = 324 bits (175), Expect = 1e-87
Identities = 193/202 (96%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 138 GATAAGAGATGTTTTGATCGAGAAAGGTATTAAACGAAGAGAATCGGTTGGACCAGCATC 197
||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||
Sbjct 219 GATAAGAGATGTTTTGATCGAGAAAGGGATTAAACAAAGAGAATCGGTTGGACCGGCGTC 278
Query 198 CTATGGAGAAGTAAGAGGTGTACTAAGGAACGACTTGGTTCGAGCTTTGGCTCATGCTCT 257
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 279 GTATGGAGAAGTAAGAGGTGTACTAAGGAACGATTTGGTCCGAGCTTTGGCTCATGCTCT 338
Query 258 TCCTCTTGGCACTCTCCGGCTTGGTTGCCATATTTTGTCGGTTAAGCTCGACGAAACAAA 317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 TCCTCTTGGCACTCTCCGGCTTGGTTGCCATATTTTGTCGGTTAAGCTCGACGAAACAAC 398
Query 318 ATCGTTTCCGATTGTGCACGTT 339
||||||||||||||| ||||||
Sbjct 399 ATCGTTTCCGATTGTACACGTT 420
Score = 228 bits (123), Expect = 9e-59
Identities = 131/135 (97%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAATTGGACATAGTAATCGTGGGAGGAGGCATTGCTGGTCTTGCAACTTCCCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAATTGGACATAGTAATCGTGGGAGGAGGCATTGCTGGTCTTGCAACTTCCCTT 60
Query 61 GCTCTTCACAGGAAGGGCATAAAGAGCGTTGTGTTGGAGAGATCAGAGTCTGTAAGATCG 120
||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 61 GCTCTTCACAGGAAGGGTATAAAGAGCATTGTGTTGGAGAGAGCAGAGTCAGTAAGATCG 120
Query 121 GAAGGAGCAGCATTT 135
|||||||||||||||
Sbjct 121 GAAGGAGCAGCATTT 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5