BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15770.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329936 jgi|Araly1|329936|fgenesh1_pm.C_scaffold_7002163 942 0.0
> Ahg329936 jgi|Araly1|329936|fgenesh1_pm.C_scaffold_7002163
Length=564
Score = 942 bits (510), Expect = 0.0
Identities = 546/564 (97%), Gaps = 0/564 (0%)
Strand=Plus/Plus
Query 55 ATGCGTCCTTTAGACGAGACCGAGACAACCGTCGTCTTCGAGAAGCTCTTCAAATTCGTC 114
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGTCCTTTAGACGAGACAGAGACGACCGTCGTCTTCGAGAAGCTCTTCAAATTCGTC 60
Query 115 GGCAACAACCTCAAGAAGATCGTCGAGAACCCATCAGACGAAGGACCCGAATCTACACCC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GGCAACAACCTCAAGAAGATCGTCGAGAACCCATCAGACGAAGGACCCGAATCAACACCC 120
Query 175 GGCAGCTACTGCTTCCGCCTCCAGAAAAACAGAGTCTACTACGTCAGCGAAGCCCTCGTG 234
|| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 GGAAGTTACTGCTTCCGCCTCCAGAAAAACAGAGTCTACTACGTCAGCGAGGCACTCGTG 180
Query 235 AAGCGAGCCACAAACATCTCCAGGAAAAACCTAGTCTCCTTCGGAACCTGCATCGGGAAA 294
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 181 AAGCGAGCCACAAACATCTCCAGAAAAAACCTAGTCTCGTTCGGAACCTGCATCGGGAAA 240
Query 295 TACACTCACGCCGGTAGTTTCCATCTGACGATTATGTCACTCAATATCTTGGCGGCGAAT 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TACACTCACGCCGGTAGTTTCCATCTGACGATTATGTCTCTCAATATCTTGGCGGCGAAT 300
Query 355 GCTAAACACAAGGTATGGCTTAAACCCACTTCGGAGATGTCGTTTCTTTATGGGAACCAT 414
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GCTAAACACAAGGTATGGCTTAAACCCACTGCGGAGATGTCGTTTCTTTATGGGAACCAT 360
Query 415 GTCTTGAAAGGTGGATTAGGGAGGATTACTGATAGTATTGTTCCTGGAGATGGTGTTGTT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCTTGAAAGGTGGATTAGGGAGGATTACTGATAGTATTGTTCCTGGAGATGGTGTTGTT 420
Query 475 GTGTTCTCGATGTCTGATGTTCCGTTAGGGTTTGGGATTGCTGCGAAGAGTACACAGGAT 534
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 421 GTCTTCTCGATGTCTGATGTTCCTTTAGGGTTTGGGATTGCGGCGAAGAGTACTCAGGAT 480
Query 535 TGTAGGAAATTGGATCCTAATGGTATTGTTGTGCTTCATCAGGCTGATATTGGAGAGTAT 594
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTAGGACATTGGATCCCAATGGTATTGTTGTGCTTCATCAGGCTGATATTGGAGAGTAT 540
Query 595 TTGAGGGGTGAAGATGACCTTTGA 618
||||||||||||||||| ||||||
Sbjct 541 TTGAGGGGTGAAGATGATCTTTGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5