BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15780.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946720 jgi|Araly1|946720|scaffold_702949.1 1142 0.0
> Ahg946720 jgi|Araly1|946720|scaffold_702949.1
Length=709
Score = 1142 bits (618), Expect = 0.0
Identities = 676/704 (96%), Gaps = 3/704 (0%)
Strand=Plus/Plus
Query 52 ATACTCGGTGGCGACTCAAAATGGGTCAAGAATCGTTTATCTATAGCTTCGTCGCCAGAG 111
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2 ATACTCGGTGGCGACTC-AAATGGGTCAAGAATCGTTTATCTACAGCTTCGTCGCCAGAG 60
Query 112 GAACTATGATCCTCGCCGAGTATACCGAATTCACAGGCAATTTCCCGTCTATTGCTGCTC 171
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GCACTATGATCCTCGCCGAGTATACCGAATTCACCGGCAATTTCCCGTCTATTGCTGCTC 120
Query 172 AGTGTCTCCAGAAGCTTCCGTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 231
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTGTCTCCAGAAGCTTCCTTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 180
Query 232 ATACCTTCAATTTCCTTGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 291
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATACCTTCAATTTCCTCGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 240
Query 292 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGTGAAAG-CTGATTTCAAGAAGAGA 350
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 241 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGT-AAGGGCTGATTTCAAGAAGAGA 299
Query 351 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTCAACAAGGAGTTCGGGCCG 410
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 300 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTAAACAAGGAATTCGGGCCG 359
Query 411 GTGATGAAGGAACACATGAATTATATTGTTGACCATGCAGAGGAGATTGAAAAACTAATA 470
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 360 GTGATGAAGGAACACATGAATTATATTGTAGACCATGCAGAGGAAATTGAAAAACTAATA 419
Query 471 AAAGTCAAGGCTCAGGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCA 530
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAGTCAAGGCTCAAGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCG 479
Query 531 ATCGACAGAGGGGAAAATCTAACAGTTCTTACTGACAAGACCGAGAATCTACGCTCTCAG 590
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 480 ATCGACAGAGGGGAAAATCTAACGGTTCTTACTGACAAAACCGAGAATCTACGCTCTCAG 539
Query 591 GCGCGGGAATACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 650
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCACAGGAGTACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 599
Query 651 AAGATAAAACTGGTGGTTCTTGGGATCTTGCTACTACTTGTTCTCATAATCTGGATATCG 710
||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 600 AAGATAAAACTTGTGGTTCTCGGGATCTTGCTACTATTTGTTCTCATAATCTGGATATCG 659
Query 711 GTTTGTCATGGATTTAATTGCACGGATTGAAGACACAACAAATT 754
|||||||| || || |||||||||||||||||| |||||||||
Sbjct 660 GTTTGTCACGGGTTCAATTGCACGGATTGAAGATGCAACAAATT 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5