BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15790.1

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890694 jgi|Araly1|890694|Al_scaffold_0007_2680                    678    0.0  


> Ahg890694 jgi|Araly1|890694|Al_scaffold_0007_2680
Length=435

 Score =  678 bits (367),  Expect = 0.0
 Identities = 420/444 (95%), Gaps = 9/444 (2%)
 Strand=Plus/Plus

Query  208  ATGGCGGACCAAACCTCCGATTCAACATCTCCCGTGGCTCCTCTCTCCGTATCTTCTCCT  267
            |||||||||||||||||||||||||||         |||||||||||||| |||||||||
Sbjct  1    ATGGCGGACCAAACCTCCGATTCAACA---------GCTCCTCTCTCCGTCTCTTCTCCT  51

Query  268  ACTGCTACTAAGAAAGATAATACCAATCCTGTTGATTCGAAGCTCACGGAATTGAATGAA  327
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  52   ACTGCTCCTAAGAAAGATAATACCAATCCTGTTGATTCGAAGCTCACGGAATTGAATGAA  111

Query  328  TCAAGGGCTGAGTTACTAAACAGGATCCAGAATCTGAAACAGGACTTGCAAAGTTGGAGA  387
            ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  112  TCAAGAGCTGAGTTGCTAAACAGGATCCAGAATCTGAAACAGGACTTGCAAAGTTGGAGA  171

Query  388  GGTAAATTGGACACTCAAGTTAAAGTCTACCGTGAGGAGCTCTCTGGGCTAAAGAAGACT  447
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172  GGTAAATTGGACACACAAGTTAAAGTCTACCGTGAGGAGCTCTCTGGGCTAAAGAAGACT  231

Query  448  CTGAATCTTGAAGTTGAGCAGCTTCGTGAGGAATTCAAAGATCTGAAAACTACCTTGAAT  507
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  232  CTGAATCTTGAAGTTGAGCAGCTTCGTGAGGAATTCAAAGATCTGAAAACCACCTTAAAT  291

Query  508  CAACAGCAAGATGATGTTTCCGCTAGCCTGAAAAGCTTAGGCCTACAAGATTCAAAAGAG  567
            || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  292  CAGCAGCAAGATGATGTTTCTGCTAGCCTGAAAAGCTTAGGCCTACAAGATTCAAAAGAG  351

Query  568  CAAATTGATAAGAGAAGTGAGGTGACAGAAGAGAAAGTGGAAGCTCTATCGACTGATGAT  627
            ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  352  CAAATGGATATGAGAAGTGAGGTGACAGAAGAGAAAGTGGAAGCTCTATCGACTGATGAC  411

Query  628  AATGCCAAAGAAGCAGAACATTAG  651
            ||||| |||| |||||| ||||||
Sbjct  412  AATGCGAAAGCAGCAGAGCATTAG  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29240277339


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5