BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15800.1

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493304 jgi|Araly1|493304|fgenesh2_kg.7__2737__AT4G15800.1         628    9e-180


> Ahg493304 jgi|Araly1|493304|fgenesh2_kg.7__2737__AT4G15800.1
Length=492

 Score =  628 bits (340),  Expect = 9e-180
 Identities = 451/500 (90%), Gaps = 26/500 (5%)
 Strand=Plus/Plus

Query  8    TTTGAAACCTCC-aaaaaaaaaaaCCTCAGAGAAAGAAGAAGAAAGAAACAATGAGAGGA  66
            ||| |||||||| ||||||||||| |||||||  | ||||||||||||||||||||||||
Sbjct  1    TTTCAAACCTCCAAAAAAAAAAAAGCTCAGAG--A-AAGAAGAAAGAAACAATGAGAGGA  57

Query  67   CTCTCCACAAAACCCGTTGCGATAATCATCGCAATTCTCACCGTCCACTTCTTATTCGCC  126
            |||||||||||| ||| ||||||| |||||||||| |||||| || ||||||||||||||
Sbjct  58   CTCTCCACAAAATCCGGTGCGATACTCATCGCAATCCTCACCTTCAACTTCTTATTCGCC  117

Query  127  GCCGTAACCTCCCAAT---CC----TC-C-GGCGATTTCGTACCGATCGAGTCGAAATGC  177
            ||||||||||| ||||   ||    || | || |||||| | |  ||||| || ||||||
Sbjct  118  GCCGTAACCTCTCAATCCACCGGATTCACAGGTGATTTCATGCAAATCGATTCAAAATGC  177

Query  178  AACGGTACCATCGCCGAGTGCTCCTTATCCACGGCGGAGGAAGAGTTCGAGATGGACTCT  237
            ||||||||||||||||||||||| ||||| |||||||| |  ||||||||||||||||||
Sbjct  178  AACGGTACCATCGCCGAGTGCTCTTTATCAACGGCGGA-G--GAGTTCGAGATGGACTCT  234

Query  238  GAGATCAACAGGCGTATTTTAGCAACAACGAAGTATATAAGCTACGGTGCGCTGAGGAGA  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  GAGATCAACAGGCGTATTTTAGCAACAACGAAGTATATAAGCTACGGTGCGCTGAGGAGA  294

Query  298  AACACAGTTCCTTGCTCACGACGCGGCGCATCTTACTACAATTGCCGACGTGGAGCTCAG  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  AACACAGTTCCTTGCTCACGACGCGGCGCATCTTACTACAATTGCCGACGTGGAGCTCAG  354

Query  358  GCTAATCCTTACTCTCGTGGCTGTAGCGCTATTACTCGTTGCAGGCGATAATCTCT-T-T  415
            |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |
Sbjct  355  GCTAATCCTTACTCTCGTGGTTGTAGCGCCATTACTCGTTGCAGGCGATAATCTCTCTCT  414

Query  416  --CTCT--ATGT--ACtttaaaatttttactctcaaattcttttgttttgatttttatac  469
              ||||  ||||  |||| ||||||||||||||||| |||||||||||| || || ||||
Sbjct  415  TTCTCTCTATGTGTACTTCAAAATTTTTACTCTCAA-TTCTTTTGTTTTAATCTT-ATAC  472

Query  470  aatttttcagattattattt  489
            ||||||||||||||||||||
Sbjct  473  AATTTTTCAGATTATTATTT  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19993528636


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5