BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15802.1
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890692 jgi|Araly1|890692|Al_scaffold_0007_2678 283 9e-76
> Ahg890692 jgi|Araly1|890692|Al_scaffold_0007_2678
Length=273
Score = 283 bits (153), Expect = 9e-76
Identities = 237/275 (86%), Gaps = 16/275 (6%)
Strand=Plus/Plus
Query 114 ATGGATGGTCATGATTCTGAGGATACTAAGCAGAGCACTGCTGATATGACTGCTTTTGTC 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGGTCATGATTCTGAGGATACTAAGCAGAGCACTGCTGATATGACTGCTTTTGTC 60
Query 174 CAAAATCTTCTCCAGCAGAT-GCA----AACCAGG-TTCCA-G---AC-AATG--TCGGA 220
|||||||||||||| ||||| | | || || | | | | | | |||
Sbjct 61 CAAAATCTTCTCCAACAGATGGTAGTTTTTTTTGGCTTTTATGTCTTCTTAGGCCTTGGA 120
Query 221 CTCCAT-CATCACAAAGATTGATGACATGGGAGGCAGAATCAATGAGCTGGAGCAAAGCA 279
| | | ||| | || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 ATTGTTACTTCA-ATAG-TTGATGACATGGGAGGCAGAATCAATGAACTGGAGCAAAGCA 178
Query 280 TCAATGATCTAAGAGCCGAGATGGGAGTAGAAGGCACTCCTCCTCCAGCCTCCAAATCAG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCAATGATCTAAGAGCCGAGATGGGAGTAGAAGGCACTCCTCCTCCAGCCTCCAAATCAG 238
Query 340 GCGATGAACCCAAAACACCGGCTAGTTCCTCTTAA 374
||||||||||||||||||| ||||||||| |||||
Sbjct 239 GCGATGAACCCAAAACACCCGCTAGTTCCACTTAA 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22797504366
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5