BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15820.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493302 jgi|Araly1|493302|fgenesh2_kg.7__2735__AT4G15820.1 1711 0.0
> Ahg493302 jgi|Araly1|493302|fgenesh2_kg.7__2735__AT4G15820.1
Length=1432
Score = 1711 bits (926), Expect = 0.0
Identities = 1287/1448 (89%), Gaps = 77/1448 (5%)
Strand=Plus/Plus
Query 1 ATGGCAGTTTTCCGATGCGCCGTCTTTTTATCTCCTTCGAGTTTCCTTCCGTCGTACTCC 60
||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 1 ATGGCGGTTTTCCGATGCGCCGTCTTTTTATCTCCTTTGACTTTGTTTCCGTCGTACTCT 60
Query 61 ACCGGAAGGAGAGTTTC-----------T---AACCCTAAATCCAAAG-CTCAAGAGACA 105
||||||||||||||||| | |||||||||||| ||| ||||||| ||
Sbjct 61 ACCGGAAGGAGAGTTTCTTTTAAAGTTATCCGAACCCTAAATCCGAAGCCTCAAGAAACC 120
Query 106 GTCATAATCGGAATCGAAACGCCGGAAAATGATCCTTCAAGCGACGTAG--T-T--TC-- 158
||| |||||| |||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct 121 GTCTTAATCGAAATCGAAACGCCGGAAAATGTTCCTCCAAGCGACGTAGTTTCTAATCAG 180
Query 159 --TG---ATGTAGAGGA-GA--TTCAGGTCTTAAGTAGCTCGGTTGTGTCAAATGAGGTA 210
|| |||||||||| || |||| |||||||||||||||||||||||||||||| ||
Sbjct 181 GATGATCATGTAGAGGAGGAGCTTCAAGTCTTAAGTAGCTCGGTTGTGTCAAATGAGCTA 240
Query 211 AATGGTATATCAACTAAGATCTCTCCGAAGTTAGTAGCGAAGTATGGATTGTGGTTGATC 270
||||||||||||| |||| |||||||||||| | | |||||||||||||||||||| |||
Sbjct 241 AATGGTATATCAAGTAAGCTCTCTCCGAAGTCATTGGCGAAGTATGGATTGTGGTTAATC 300
Query 271 GGAATATTCGCTTTTCAAACTGTTTGTGCTGTTTTGTTTCTGGGAGACTCAACGAAATCC 330
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAATATTCGCTTTTCAAACAGTTTGTGCTGTTTTGTTTCTGGGAGACTCAACGAAATCC 360
Query 331 GAGAAAACGCCGGAAGTTTCAAGTGATAGT-G-----A---GG---G-TA-A-CAATTTG 375
||||| ||||||||| |||| |||| |||| | | || | | | |||| ||
Sbjct 361 GAGAATACGCCGGAAATTTCGAGTGGTAGTGGTCAAAATGGGGAAAGAGAGAGCAATGTG 420
Query 376 GTTTTGCTAGAGGATGTTGAAATGAATGAGAAGATTGCAGAGATCAGAATGATGGCACGT 435
|||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 421 GTTTCATTAGAGGATCTTGAGATGAATGAGAAGATTGCAGAGATCAGATTGATGGCACGT 480
Query 436 GAAGCACGTAAAAGTGAGGGTAAGCAAGAAGAAGATGATGAAACTGGGATTGATATTGAG 495
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 481 GAAGCACGTAAAAGTGAGGGTAAG---GAAGAAGAGGATGAAACTGGGATTGATATTGAG 537
Query 496 AAAGAGATAGAAGCAAGATTGTCTAACATGGAGAAACGGTTGAATTCACAGAGGAAAGGT 555
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 538 AAAGAGATAGAAGCAAGATTGTCTAACATGGAGAAACGTTTGAATTCGCAGAGGAAAGGT 597
Query 556 TTGGCGGGATTGCGCGTAGAACCGTTGGATGAATCTGGAAATGATGAGAAAAGTTTGATG 615
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTAGCGGGATTGCGTGTAGAACCGTTGGATGAATCTGGAAATGATGAGAAAAGTTTGATG 657
Query 616 TTTGAGAAGAAGTACAAGTTTAAAGCTGAGAAGCCTCCGATGGGTAATGTAAAAGGCTTT 675
|||||||||||||| ||||||||||| |||||||| || | ||||||||| |||||||||
Sbjct 658 TTTGAGAAGAAGTATAAGTTTAAAGCCGAGAAGCCACCAACGGGTAATGTGAAAGGCTTT 717
Query 676 GGTGGAAGTAAAGGAAGTGATGAGATTATGTCTGGGACTGAGAAGACAGGGAAAAATGGA 735
||||||||||| |||| ||||||| |||| ||||||||||||| ||||||| |||||||
Sbjct 718 GGTGGAAGTAAGGGAAATGATGAGGTTATATCTGGGACTGAGATGACAGGGCAAAATGGG 777
Query 736 AGTGCTAGTGAATCACGAGA-CGGTGAGAAGAATCCTGAAGAACAACTA--CAAGAG--- 789
|||| ||||||||||||||| | | |||||| | || || || | | || |
Sbjct 778 AGTGTTAGTGAATCACGAGATC-CT--GAAGAA--C--AACAA-AAAGAGGC-AGGGCTT 828
Query 790 TCAGTATTCCGAGA-------TGGTGCTGCTCAGGAATCTGAGCAAAGACGACCATCAAA 842
|||| ||||||||| ||||||||||||||||||||||| | ||||||| |||||
Sbjct 829 TCAG-ATTCCGAGATGGTTTCTGGTGCTGCTCAGGAATCTGAGCTACGACGACCGTCAAA 887
Query 843 CGAAGTTAAGAAGTCAAGAAAATCTGGAAATCGAGTGGGCGGAACACCAAATATGAAAGC 902
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||
Sbjct 888 CGAAATTAAGAAGTCAAGAAAATCTGGAAACCGAGTGGGCGGAACACAAAATATGGTAGC 947
Query 903 TGGTTCTGGATTTGGTAGCACTTCATTGTCAGAGAAACATGGAGACGTCAGGAAAGGAAA 962
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 948 TGGTTCTGGATTTGGTAGCACTTCATTGTCAGGGAAACATGGAGAAGTCAGGAAAGGAAA 1007
Query 963 ACC-ATTGAGAAGAGCAAAGGAGAAACAATCTGAGAAAGAGAATAAATTGTGGTGGCTCA 1021
||| | |||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1008 ACCGA-TGAGAAGAGCAAGGGAGAAACAATCTGAGAAAGAGAATAAAATGTGGTGGCTCA 1066
Query 1022 AGCTTCCCTATGTGCTGAGAATTCTCATGCGGAGTAATATCGATCAAGACATATCTGAGG 1081
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1067 AGCTTCCCTATGTGCTGAGGATTCTCATGCGTAGTAATATCGATCAAGACATATCTGAGG 1126
Query 1082 GATATTTTACCT-TGAGGACCGAATCTATGGAACAAAATGAGGGTCAAGTTTCACATATG 1140
||| ||||| || ||||||||||||||||||||||||||||||| || || ||| | |||
Sbjct 1127 GATTTTTTA-CTCTGAGGACCGAATCTATGGAACAAAATGAGGGCCAGGTCTCATACATG 1185
Query 1141 ATTGCATTTGAAGATCAAAGTGATGCTAGAAACTTCTCTTATCTGCTTGAATCAGTTTTT 1200
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATTGCATTTGAGGATCAAAGTGATGCTAGAAACTTCTCTTATCTGCTTGAATCAGTTTTT 1245
Query 1201 GAAGACTTGGATGATTTCAGT-GCCGATATAGCTCCCGTAACAACCAAGGATCTTTATGA 1259
||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 1246 GAAGACTTGGATGATTTCA-TCGCCGATATAGCTCCCGTGTCAACCAAGGATCTTTATGA 1304
Query 1260 TGAAGTTAGTTCTGGTGGCAAGAATGTGATAGTTGTGAGGAAGAGGCAGCTTACGTTGTA 1319
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TGAAGTTAGCTCTGGTGACAAGAATGTGATAGTTGTGAGGAAGAGGCAGCTTACGTTGTA 1364
Query 1320 TGCTGGACAACCATTTGAAGACGTTGAAAGAGCTTTGCGAACTCTGATTCAAGAACGAAG 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1365 TGCTGGACAACCATTTGAAGACGTTGAAAGAGCTTTGCGAACTCTGATTCAAGAACAAAG 1424
Query 1380 ATGAAAAA 1387
||||||||
Sbjct 1425 ATGAAAAA 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5