BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15830.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493301 jgi|Araly1|493301|fgenesh2_kg.7__2734__AT4G15830.1 1465 0.0
> Ahg493301 jgi|Araly1|493301|fgenesh2_kg.7__2734__AT4G15830.1
Length=1023
Score = 1465 bits (793), Expect = 0.0
Identities = 903/957 (94%), Gaps = 3/957 (0%)
Strand=Plus/Plus
Query 53 AATGGCGTTGAGGAACATTGAAAACGCTCTTCCGATCTCACAGGAACGACCTAAGAAGCT 112
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 AATGGCGTTGAGAAACATTGAAAACGCTCTTCCGATCTCACAAGAACGGCCTAAGAAGCT 60
Query 113 GGCCAAACTCTCAAAGCAACCGGAGATTGGTCTAAATGACGAAAACAACCCTGTCGCTGT 172
||| |||||||| || ||||||||||||||| | |||||||||||||||||||| | |||
Sbjct 61 GGCTAAACTCTCGAATCAACCGGAGATTGGTTTGAATGACGAAAACAACCCTGTTGTTGT 120
Query 173 GGCTGAATCGACCGTCGAATACGTTGCTTCTGAGAATCTCAAACCATTTTCAGATCCTGA 232
| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GCCTGAATCGATCGTTGAATACGTTGCTTCTGAGAATCTCGAACCATTTTCAGATCCTGA 180
Query 233 ATCTTCTGTCCAGAGATTACTTGAAGAATTAGCATCAAAGGATTGGATTAAAGTATGTGA 292
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCCTCTGTCCAGAGATTACTAGAAGAATTAGCATCAAAGGATTGGATTAAAGTATGTGA 240
Query 293 CTCATTGAACAACACAAGGAGATTTGCAATTCATCACTCTTCTCTGTTGCTACCAATTCT 352
|||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 241 ATCATTGAATAACACAAGGAGATTCGCAGTTTATCACTCTTCTCTGTTGCTACCAATTCT 300
Query 353 AGAAAAGCTTATAGTTGTGATGGTGAAGGCGATGAAGAATCCTAGAAGTGCATTGTGCAA 412
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 301 AGAAAAGCTTATAGTTGTGATGGTGAAGGCGATGAAAAACCCTAGAAGTGCATTGTGTAA 360
Query 413 GACTTCGATTATGACTTGTTCTGATATCTTCACTGCTTATGGAGAAAAGTTGCTGGAAGG 472
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GACTTCGATTATGACTTGTTCTGATATCTTCATTGCTTATGGAGAAAAGTTGCTGGAAGG 420
Query 473 ACCTCATTTGAAATCTATGGACGATCTGCTGTTGCAGTTGCTGATGAAAGCTTCACAAGA 532
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCTCATTTGAAATCAATGGATGATCTGCTGTTGCAGTTGCTGATGAAAGCTTCACAAGA 480
Query 533 CAAGAAGTTTGTGTGTGAAGAAGCAGAGAAAGCGCTGAACACGATGGTTAACTCGGTGGC 592
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 481 TAAGAAGTTTGTGTGTGAAGAAGCAGACAAAGCTCTGAACACGATGGTTAACTCGGTGGC 540
Query 593 TCGCTTGCCGCTTCTGCGTAAGCTTCAGAGTTATGTCCGTCACAGTAACCCTCGTGTCAG 652
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 TCGCTTGCCGCTTCTGCGTAAGCTTCAGACTTATGTCCGTCACAGTAACCCTCGTGTCAG 600
Query 653 GGCCAAAGCTGCTGTGTCTACTTCCAACTGCGTTTCTAAAATGGAGGTAAATGAAATGGA 712
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 601 GGCCAAAGCTGCTGTCTCTACCTCCAACTGCGTTTCTAAAATGGAGCTAAATGAAATGGA 660
Query 713 AGAATTTGGGATGATTCTGCTCGCACAAATGGCTGCGGATCAGTTGAGTGACAAGTTGCC 772
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 AGAATTTGGGATGGTTCTGCTCGCACAAATGGCTGCGGATTTGTTGAGTGACAAGTTGCC 720
Query 773 AGAGGCAAGGGAAGCTGCAAGGAGTATGGTGAACTCGCTTTTCGAGAAATTTACATGgaa 832
||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 721 AGAGGCAAGGGAAGCCGCGAGGAGTATGGTGAACTCTCTTTTCCAGAAATTTACATGGAA 780
Query 833 tgaagaagaagacgaagaaggaagcaagcaagaagcttggaagaagttttgtgagaagaa 892
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAAGAGGATGACGAAGAAGGAAGCAAGCAAGAAGCTTGGAAGAAGTTTTGTGAGAAGAA 840
Query 893 TGTAACAGGGCTTAATGCACAAGCCATGATCAAGATCGT-TGCATCTCAATAAAATTCTG 951
||||||||||| || |||||||||||||||||||| || | |||||||||||| ||||
Sbjct 841 AGTAACAGGGCTCAACGCACAAGCCATGATCAAGATTGTCT-CATCTCAATAAATTTCTA 899
Query 952 AAGATGAAAATGTTGTTCTCTCTGATTCATGTAAAATACGTTTTTACATGATATAAA 1008
|||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 AAGAGGAAA-TGTTGTTCTCTCTGATTCATGTAAAATACGTTTTTACATGATGTAAA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5