BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15850.1
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493299 jgi|Araly1|493299|fgenesh2_kg.7__2732__AT4G15850.1 2793 0.0
> Ahg493299 jgi|Araly1|493299|fgenesh2_kg.7__2732__AT4G15850.1
Length=1807
Score = 2793 bits (1512), Expect = 0.0
Identities = 1724/1824 (95%), Gaps = 23/1824 (1%)
Strand=Plus/Plus
Query 1 GGAGAGAAGCTTTTGTCTCACCACTCACCGTCACAACTTGTGCTTCCTCTCGTCCTCGTC 60
|||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1 GGAGAGAAGCTTTTGTCT--CC-GTCA----CACAACTTGTGCTTCCTCTCGTCCTCGTC 53
Query 61 GCCGT--CGTCAGAGAGAAAACGATTAAAGCTGGTGGTATGGGGAGAGATAAAGAAGATA 118
||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 54 GCCGTCGCGTCAGAGAGAAAACGATT-AAGC---AGGTATGGGGAGAGATAAAGAGGATA 109
Query 119 AGACAGAGATGGATTCGGTTGTTCCATGGATGAGAGCTCCGGTTGACGTCAGCAATGTCG 178
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 AGACAGAGATTGATTCGGTTGTTCCATGGATGAGAGCTCCGGTTGACGTCAGCAATGTCG 169
Query 179 AAAACTGCGCTCTCGATACCCTCCCTTGCCTTAATCCCAAGTTGAAGAAGGCATTGGAGA 238
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 AAAATTGCGCTCTCGAAACCCTCCCTTGCCTTAATCCCAAGTTGAAGAAGGCATTGGAGA 229
Query 239 ACATGGGCATATCTTCACTATTTCCAGTGCAAGTTGCAGTTTGGCATGAAACTATAGGGC 298
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 230 ACATGGGCATATCTTCACTTTTTCCAGTGCAAGTTGCAGTTTGGCATGAGACTATAGGGC 289
Query 299 CAGGTGGTTTTGAAAGAGACATCTGTGTTAACTCTCCAACAGGAAGTGGAAAGACTCTTT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 290 CAGGTGGTTTTGAAAGAGACATCTGTGTTAACTCTCCAACAGGAAGTGGAAAGACTCTCT 349
Query 359 CTTATGCTTTACCAATTGTGCAGCTCCTTGCATCTCGTCCTGTGAGATGCCTTCGTGCTT 418
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 350 CTTATGCTTTACCAATTGTGCAGATCCTTGCATCTCGTCCTGTCAGATGCCTCCGTGCTT 409
Query 419 TAGTCGTATTGCCAACACGTGATTTAGCCTTGCAGGTTAAAGATGTATTTGATGCAATAG 478
|||||||||| || || ||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 410 TAGTCGTATTACCCACTCGTGATTTAGCATTGCAGGTTAAAGATGTGTTTGATGCTATAG 469
Query 479 CTCCAGCTGTAGGATTATCTGTTGGCTCAGCTGTGGGTCAATCTTCTATAGCTGGTGAAA 538
| ||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 470 CGCCAACCGTGGGATTATCTGTTGGCTCAGCTGTGGGTCAATCTTCGATAGCTGGTGAAA 529
Query 539 TCTCACAGCTTATCAAGACACCTAAACTTGATGCGGGAATATGCTATGATCCCGATGATC 598
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 530 TCTCACAGCTCATCAAGACACCTAAACTTGATGCAGGAATCTGCTATGATCCCGAGGATC 589
Query 599 TTTCTCAAAACCTTGAAAGTGCTGTGGACATATTAGTAGCAACACCAGGAAGGCTGATGG 658
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTTCCCAAAACTTTGAAAGTGCTGTGGACATATTAGTAGCAACACCAGGAAGGCTGATGG 649
Query 659 ATCATATCAACAACACCAAGGGCTTTACGCTTGAGCATTTGCGTTACCTTGTTGTTGATG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATCATATCAACAACACCAAGGGCTTTACGCTTGAGCATTTGCGTTACCTTGTTGTTGATG 709
Query 719 AAACCGACAGATTGCTTAGGGAGGCATATCAATCCTGGCTACCAACTGTTCTGCAACTGA 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AAACTGACAGATTGCTTAGGGAGGCATATCAATCCTGGCTACCAACTGTTCTGCAACTGA 769
Query 779 CTCAGACATCTGACGATAGCCTATTTCCTTCATTTACACCATTTGTTCCTTCCGCTTTTG 838
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 CTCAGACATCTGACGATGGCCTATTTCCTTCATGTACACCATTTGTTCCTTCCGCTTTTG 829
Query 839 GTTCTCTGCAGACTGTTCGTAGACAAAGTGTGGAGAGAGGATTCAAGGGTAAACCATACC 898
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 830 GTTCTCTGCGGACTGTTCGTAGACAAAGTGTAGAGAGAGGTTTCAAGGGTAAACCATACC 889
Query 899 CAAGGCTGGTGAAAATGGTACTATCAGCTACATTGACGCAGGATCCAAGCAAGCTTATTC 958
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 890 CAAGGCTGGTGAAGATGGTATTATCAGCGACATTGACGCAGGATCCAAGCAAGCTTATTC 949
Query 959 AGCTTGACCTGCATCACCCGTTATTCATGACAACTGGAGGAAGCCGATACAGACTACCTG 1018
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 950 AGCTTGACCTGCATCACCCGTTATTCATGACTACTGGAGGAAGCCGATACAGCCTACCTG 1009
Query 1019 AGAAGTTGGAATGTCTTAGACTGATTTGCGAAACCGGAATGAAGCCTGTATATTTGGTTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGAAGTTGGAATGTCTTAGACTGATTTGCGAAACCGGAATGAAGCCTGTATATTTGGTTG 1069
Query 1079 CTCTCCTAAAATCATGGGAAGGTGAAAAGTGTATCATTTTCACATCTTCCGTTGAGACAA 1138
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1070 CTCTCCTAAAATCATGGGAAGGTGAAAAGTGTATTATTTTCACATCTTCCGTAGAGACAA 1129
Query 1139 CTCGTCGTCTATGCAAGTTACTCAACTTTTTTGGTGACCCAAAAATAAAAGCAAAAGAGT 1198
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1130 CTCGTCGTCTATGCAAGTTACTCAACTTTTTCGGTGACCCAAAAATAAAAGCAAAAGAGT 1189
Query 1199 ATTCAGGTGGTCTTAACCAATCACTTCGGAGCAAAGAACTAAAAGCGTTTAGAAAAGGTG 1258
||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||
Sbjct 1190 ATTCAGGTGGTCTTAACCAATCAGTTCGGAGCAAAGAATTAAAGGCCTTTAGAAAAGGTG 1249
Query 1259 ATATCCAAGTTCTTGTTGCATCTGATGCTCTAACACGTGGAATGGATGTTAAAGGGGTAA 1318
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1250 ATATCCAAGTTCTTGTTGCATCTGATGCTCTAACACGAGGAATGGATGTTAAAGGGGTAA 1309
Query 1319 CAAATGTTATTAATTATGATATGCCACCATTTGCAAAGACCTTCATCCATCGTGCTGGAC 1378
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1310 CAAATGTCATAAATTATGATATGCCTCCATTTGCAAAGACCTTCATCCATCGTGCTGGAC 1369
Query 1379 GGACAGCTAGAGCAGGCCAGGCTGGCCGCTGCTTCACATTGCTGAGTAATCATGAGGTAA 1438
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1370 GGACAGCTAGAGCAGGCCAGGCTGGCCGGTGCTTCACATTACTGAGTAATCATGAGGTAA 1429
Query 1439 GGCGTTTCTCGAAGCTCCTGGAGAAAGTTGGGAGTGATTCATGTCCTATCTATCCGATCC 1498
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GGCGTTTCTCAAAGCTCCTGAAGAAAGTTGGGAGTGATTCATGTCCTATCTATCCGATCC 1489
Query 1499 CGCCTACTTCATTAGATTCCATTCGTGCCACTTACACACCCGCTCTAGAGAAGCTCAAGG 1558
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AGCCCACTTCATTAGATTCCATTCGTGCCACTTACACACCCGCTCTAGAGAAGCTCAAGG 1549
Query 1559 AGTTGGTTGAGTCAGAAGCACCCAAGAAAGGAAGACAAGCTTTTAGACATAATTCAAGAA 1618
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1550 AGTTGGTGGAGTCAGAAGCACCCAAGAAAGGAAGACAAGCTTTTAGACATAATACAAGAA 1609
Query 1619 CGGGTAACTCCCAAACCAAACTTAACAAACCGAGATCAGAAGCATAGTTCTCCTGTGATG 1678
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1610 CCGGTAACTCCCAAACCAAACTTAACAAACGGAGATCAGAAGCATAGTTCTTCTG-GAT- 1667
Query 1679 ATCCCTCGGGT-GTG-T-CGGGTCAA-GTACAAGTTATTGGGTTTGGATATTTCTTGACT 1734
||||| | | | | | | | ||| |||| |||||||||||||||||||| ||||||
Sbjct 1668 --CCCTCAGTTTGGGATACAAGACAAAGTACGAGTTATTGGGTTTGGATATT-CTTGACG 1724
Query 1735 TAACATTGTTCGTTGAGGCGAAGAATCCATTGTATTACTGAGAAACTACAGTATAACGCT 1794
||| |||||||||||||||||||| |||||||||||| ||| |||||| || ||||||||
Sbjct 1725 TAAAATTGTTCGTTGAGGCGAAGACTCCATTGTATTAATGAAAAACTATAGCATAACGCT 1784
Query 1795 GACACAATTCGTCACAAAAATTTT 1818
||||||| ||||||||||| ||||
Sbjct 1785 GACACAAGTCGTCACAAAA-TTTT 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70047960555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5