BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15870.1

Length=1797
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890684 jgi|Araly1|890684|Al_scaffold_0007_2670                    139    6e-32


> Ahg890684 jgi|Araly1|890684|Al_scaffold_0007_2670
Length=306

 Score =  139 bits (75),  Expect = 6e-32
 Identities = 122/142 (86%), Gaps = 13/142 (9%)
 Strand=Plus/Plus

Query  1502  GTGACATGAGCAGAGGGTTTGATGTTAATGCCATC-ATGTACTATATGAAGCAATACAAA  1560
             ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct  170   GTGACATGAGCAGAGGGTTTGATGTTAATGCCATCGA-GTACTATATAAAGCAATACAAA  228

Query  1561  GTTA-CCGAGGAGGAAAC--TT-TCACAAGGCTTCA-AAAGATGGCTAGGGACTTGGATA  1615
              ||| || ||||||||||  || | ||| | ||||| ||| |||| ||| ||||||||||
Sbjct  229   -TTAACCAAGGAGGAAACGATTAT-ACA-G-CTTCACAAA-ATGGTTAGAGACTTGGATA  283

Query  1616  CAACTGTGAACGAGGAGATATT  1637
              |||  ||| ||||||||||||
Sbjct  284   AAACCATGA-CGAGGAGATATT  304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67457823895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5