BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15880.1
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493298 jgi|Araly1|493298|fgenesh2_kg.7__2731__AT4G15880.1 1812 0.0
> Ahg493298 jgi|Araly1|493298|fgenesh2_kg.7__2731__AT4G15880.1
Length=1826
Score = 1812 bits (981), Expect = 0.0
Identities = 1141/1217 (94%), Gaps = 16/1217 (1%)
Strand=Plus/Plus
Query 594 AGAAGAAGAATCTTCAGCCTTCGTTTTCTTCTGGTGTTACTGATGTTAAGAAAGGGGAGA 653
|||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 621 AGAAGAAGAAGAATCAGCCTTCTTTTTCTTCTGGTGTTACGGATGTTAAGAAAGGGGATA 680
Query 654 ACTTTAGAGTTGAGGATACTAGTATGATGCTGGATTCGTTGTCGTTAGATAGAGATGTCG 713
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 681 ACTTTAGAGTTGAGGATACTAGTATGATGCTGGATTCGTTGTCTTTAGATAGAGATGT-G 739
Query 714 ATAATGATGCTTCGAGCCTCGAAGCTTATAGAAAGCTTATGCAAAGTGCGGAGAAGAGGA 773
| |||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct 740 --AGTGATGCTTCGAGTCTTGAAGCTTATAGAAAGCTTATGCAAAGTGCGGAGAGGAGGA 797
Query 774 ATTCAAAGTTGGAAGCTTTGGGTTTTGAGATTGTGTTGAATGAGAAGAAGTTGTCACTGC 833
|||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 798 ATTCGAAGTTGGAAGCTTTGGGTTTTGAGATTGTGTTGAATGAAAAGCGGTTGTCACAGC 857
Query 834 TGCGTCAGTCTCGCCCAAAGACTGTGGAAAAGCGTGTTGAGGTGCCTCGTGAACCTTTTA 893
|||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 858 TGCGTCAGTCTCGCCCGAAGCCTGTGGAAAAACGTGTTGAGGTGCCTCGTGAACCTTTTA 917
Query 894 TTCCTCTCACAGAAGATGAAGAGGCTGAAGTCTACCGTGCCTTTTCTGGGAGAAATAGAA 953
| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 918 TACCTCTCACAGAAGACGAAGAGGCTGAAGTCAACCGTGCCTTTTCTGGGAGAAACAGAA 977
Query 954 GGAAGGTCTTGGCTACTCATGAAAACTCAAACATTGATATTACTGGAGAAGTTCTGCAAT 1013
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 978 GGAAAGTCTTGGCTACTCATGAAAACTCAAACATTGATATTACTGGAGAAGTTCTACAAT 1037
Query 1014 GCCTTACACCATCTGCATGGCTAAACGACGAGGTTATCAATGTCTACCTTGAACTACTCA 1073
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GCCTTACACCATCTTCATGGCTAAACGACGAGGTTATCAATGTCTACCTTGAACTACTCA 1097
Query 1074 AAGAAAGAGAAACTAGAGAGCCCAAAAAGTATTTGAAGTGTCACTACTTCAATACCTTTT 1133
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 1098 AAGAAAGAGAAACTAGAGAGCCCAAAAAGTATTTGAAGTGTCATTTCTTCAATACATTTT 1157
Query 1134 TCTACAAAAAGCTGGTAAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTA 1193
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TTTACAAAAAGCTGGTGAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTA 1217
Query 1194 CGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATGATATTTGTTCCCATCCACA 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATGATATTTGTTCCCATCCACA 1277
Query 1254 GGGGTGTGCATTGGACCTTGGCAGTAATTAACAACAGGGAAAGCAAGCTCTTGTATCTTG 1313
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1278 GGGGTGTACATTGGACCTTGGCAGTAATTAACAACAGGGAAAGGAAGCTGTTGTATCTTG 1337
Query 1314 ATTCACTGAATGGAGTTGATCCTATGATTCTGAATGCTCTGGCAAAATACATGGGTGATG 1373
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 1338 ATTCACTGAATGGAGTTGATCCTATGATTTTGAATGCTCTGGCAAAATACATGGGCGACG 1397
Query 1374 AAGCAAATGaaaaaagtggaaaaaaGATTGATGCT-AATTCGTGGGACATGGAATTTGTG 1432
|||| || ||||||||||||||||| ||||| || ||||||||||| |||||||||||
Sbjct 1398 AAGCGAAGGAAAAAAGTGGAAAAAATATTGAA-CTTAATTCGTGGGAGATGGAATTTGTT 1456
Query 1433 GAAGACCTTCCCCAACAAAAGAATGGGTATGACTGTGGAATGTTTATGCTTAAGTACATC 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GAAGACCTTCCCCAACAAAAGAATGGGTATGACTGTGGAATGTTTATGCTTAAGTACATC 1516
Query 1493 GATTTTTTCAGCAGAGGCCTGGGGCTATGTTTCAGCCAGGAACACATGCCATACTTCCGA 1552
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 GATTTTTTCAGTAGAGGCCTGGGGCTATGTTTCAGCCAGGAACACATGCCATACTTCCGA 1576
Query 1553 CTCAGAACAGCTAAAGAGATTCTGAGGCTACGAGCTGATTGAAGTTGCTTGTGCTAATG- 1611
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1577 CTCAGAACAGCTAAAGAGATTCTGAGACTACGAGCTGATTGAAGTTGCTTGAGCTAATTA 1636
Query 1612 -T-T-TTTTCGGCTATTAGGAATACTATTTTTGGTTGCCATTGTTGATTTGTTCAAACTT 1668
| | ||||| ||| |||||||| ||||||||| ||||||||||| |||||||| |||||
Sbjct 1637 ATGTGTTTTCAGCTTTTAGGAATGCTATTTTTGCTTGCCATTGTTTATTTGTTCGAACTT 1696
Query 1669 TAAATCCCACTCCTTTTAGGCAGTGAAGCACTCGGCTTTAAAAGCAGAGGTAAAAACTGA 1728
||||||||||| ||||||||||||||||||||| |||| || |||||||||||| |||||
Sbjct 1697 TAAATCCCACTTCTTTTAGGCAGTGAAGCACTCAGCTTCAATAGCAGAGGTAAACACTGA 1756
Query 1729 GTCAAGCCCAGAGCTCTTAGCTCGTTCCGTTATTGTAtttttttCCTTCTTCTTGTTTTA 1788
||||||||||||||||||||||| || ||||||||||||| | || || ||||||||
Sbjct 1757 GTCAAGCCCAGAGCTCTTAGCTCCTT---TTATTGTATTTTTCT--TT-TT-TTGTTTTA 1809
Query 1789 AAATGTAGATGAAGCGT 1805
|||||||||||||||||
Sbjct 1810 AAATGTAGATGAAGCGT 1826
Score = 782 bits (423), Expect = 0.0
Identities = 542/596 (91%), Gaps = 21/596 (4%)
Strand=Plus/Plus
Query 15 TTTTCTTCTACAGAACCCTAATTTCATGTTCTAGG--------TGTCTCTCGAATGGTTC 66
|||||||||||||||||||||||||| |||||||| | |||||| ||| |||
Sbjct 1 TTTTCTTCTACAGAACCCTAATTTCACGTTCTAGGTTTCAATATCTCTCTCTTATGATTC 60
Query 67 TCATCTCATTGATTACTCAATCTCTAGGGTTTAGTGGTTCATCCAAATTCGTACCCTAAT 126
|||| || |||||| | ||||||||||||||||||| || | |||||||| |||||||||
Sbjct 61 TCATTTCTTTGATTCCCCAATCTCTAGGGTTTAGTGTTTTACCCAAATTCATACCCTAAT 120
Query 127 GGGTGCCGTAGCGATCAATCGTAAACGCAGCGACGAATCCTTCAATTTCATTAATCAACA 186
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GGGTGCCGTAGCGATCAATCGTAAACGCAGCGACGAATCCTTCAATTTC---AATCAACA 177
Query 187 ATCAACCAACCCTTTACGAAATTCACCGTATTTCCAAGCTTCCAAGAAACGAAGATTCTC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCAACCAACCCTTTACGAAATTCACCGTATTTCCAAGCTTCCAAGAAACGAAGATTCTC 237
Query 247 ATTCGCTATGTCTGAAGATTCTGGTAAGCCAG------CGTCTTCAAACCCAACAATTTC 300
||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct 238 ATTCGCTATGTCTGAAGATTCAGGTAAGCCAGCTTCTTCGTCTTCAAACCCAACAATCTC 297
Query 301 GAGGATTTCAAGGTACCCTGATGCTAAAGCTCCTCTTAGACGAGAGATTCATGCTCCTAG 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 GAGGATTTCAAGGTACCCTGATGCTAAAGCTCCTCTTAGACGAGAAATTCATGCTCCTAG 357
Query 361 TAGAGGAATTCTTAGATATGG-AAAGGCAAAATCTAATGATTACTGCGAAAAGGACGCAA 419
|||||| |||||||||||||| |||| | |||||||| ||||| ||||||||||||| ||
Sbjct 358 TAGAGGCATTCTTAGATATGGGAAAG-CTAAATCTAACGATTATTGCGAAAAGGACGGAA 416
Query 420 ATTTCTTTGTTCGTAAGTATGATGATGCAAAGAGATCAGCTTTGGAAGCTTTGAGATTCG 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 417 ATTTCTTTGTTCGTAAGTATGATGATGCAAAGAGATCAGCTTTGGAAGCTTTGAGATTTG 476
Query 480 TTAATAAAGGTAAAGACTTTGTTGATTTGGGTGATGAGGTTGAAAAGGAGGAAGTTGTTT 539
|||| |||| |||||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 477 TTAAGAAAGATAAAGATTTTGTTGATTTGGGTGATGAGGTTGAAAAAGAAGCTGTTGTTT 536
Query 540 CTGATGATTCAAGTGTTCAAGCA-ATTGAAGTTATTGATTGTGATGATGATGAGGA 594
||||||||||||||||| ||| | |||| |||| |||||||||||||||| |||||
Sbjct 537 CTGATGATTCAAGTGTTGAAG-AGATTGTAGTTGTTGATTGTGATGATGAGGAGGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71876292315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5