BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15910.1

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493294 jgi|Araly1|493294|fgenesh2_kg.7__2727__AT4G15910.1         516    9e-146


> Ahg493294 jgi|Araly1|493294|fgenesh2_kg.7__2727__AT4G15910.1
Length=315

 Score =  516 bits (279),  Expect = 9e-146
 Identities = 303/315 (96%), Gaps = 0/315 (0%)
 Strand=Plus/Plus

Query  197  ATGGCCGCTCGTTCACTCTCCGGTGCCGTTAAATCTCTTTGCTCCGCCGCATCCGGAAGT  256
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGCCGCTCGTTCACTCTCCGGTGCCGTTAAATCTCTTTGCTCCGCCGCATCCGGCAGT  60

Query  257  CTGTCTTGTTCCATTGTCTTAAGGAGGAGTTACGTTGCTACATCGCAGAATGTAACAGCA  316
            || ||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct  61   CTTTCTCGTTCCATTGTCTTAAGAAGGAGTTACGTAGCGACATCGCAGAATGTGACAGCA  120

Query  317  GCAGGATTGAGTAAGGGAGGTTCCACCAGAGTTATGGTGGGGAAGATGGAACAGAGAGGT  376
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct  121  ACAGGATTGAGTAAGGGAGGTTCCACCAGAGTTATGGTGGGGAAGATGGAACAAAGAGCT  180

Query  377  TTAGATCAAGAGGCAGAGTCTGCTTGGGGACCAGATCCAGTTACTGGATACTACAGACCT  436
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  TTAGATCAAGAGGCAGAGTCTGCTTGGGGACCAGATCCAGTCACTGGATACTACAGACCT  240

Query  437  TCCAATCGTGCGGCTGAGATTGATCCAGCTGAGCTCAGAGAGTTGCTTTTGAAAAACAAA  496
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  TCCAATCGTGCGGCTGAGATTGATCCAGCTGAGCTCAGAGAGTTGCTCTTGAAAAACAAA  300

Query  497  GCAAAGTCTTTCTGA  511
            |||||||||||||||
Sbjct  301  GCAAAGTCTTTCTGA  315



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24398666880


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5