BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15930.1
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493292 jgi|Araly1|493292|fgenesh2_kg.7__2725__AT4G15930.1 835 0.0
> Ahg493292 jgi|Araly1|493292|fgenesh2_kg.7__2725__AT4G15930.1
Length=633
Score = 835 bits (452), Expect = 0.0
Identities = 543/583 (93%), Gaps = 22/583 (4%)
Strand=Plus/Plus
Query 113 aaaaaaaaaaaTGAGTGACGGGAGGAGGAAGAAGAGCGTGAACGGAGGTGCACCGGCGCA 172
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 73 AAAAAAAAAAATGAGTGACGGGAGGAGGAAGAAGAGTGTTAACGGAGGTGCACCGGCGCA 132
Query 173 AACAATCTTGGATGATCGGAGATCTAGTCTTCCGGAAGTTGAAGCTTCTCCACCGGCTGG 232
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AACTATCTCCGATGATCGGAGATCTAGTCTTCCGGAAGTTGAAGCTTCTCCACCGGCTGG 192
Query 233 GAAACGAGCTGTTATCAAGAGTGCCGATATGAAAGATGATATGCAAAAGGAAGCTATCGA 292
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 193 GAAACGAGCTGTTATCAAGAGTGCTGATATGAAAGATGATATGCAGAAGGAAGCTATCGA 252
Query 293 AATCGCCATCTCCGCGTTTGAGAAGTACAGTGTGGAGAAGGATATAGCTGAGAATATAAA 352
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 253 TATCGCCATCTCCGCATTTGAGAAGTATAGTGTGGAGAAGGATATAGCTGAGAATATAAA 312
Query 353 GAAGGAGTTTGACAAGAAACATGGTGCTACTTGGCATTGCATTGTTGGTCGCAACTTTGG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GAAGGAGTTTGACAAGAAACATGGTGCTACTTGGCATTGCATTGTTGGTCGCAACTTTGG 372
Query 413 TTCTTATGTAACGCATGAGACAAACCATTTCGTTTACTTCTACCTCGACCAGAAAGCTGT 472
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 373 TTCTTATGTAACGCACGAGACAAACCACTTCGTTTACTTCTACCTCGAGCAGAAAGCTGT 432
Query 473 GCTGCTCTTCAAGTCGGGTTAAGAATTTGAAAACCAAGAAAACTCATTGTGATGTTCAGT 532
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 433 TCTGCTCTTCAAGTCGGGTTAAGAATTTGAAAACCAAGAAAGCTCATTGTGATGTTCAGT 492
Query 533 CCCATTATCATCATCACGTTGTAGCTAGTTTCTTGTAATTTGTATGTATGTGTTGCTTCT 592
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 493 CCCATTATCATCATCACGTTGTAGTTAGTTTCTTGT--TTTGTATGTATGTGTT------ 544
Query 593 AAGGCTTTTAACCGAACCAAATTTGGAGAATAAACCCTATAAAAAGTCTTTTAGTACATG 652
|| | | || | ||||| ||||||||||||| |||||||||||||||||||
Sbjct 545 AA--C------C--AA--A--TTTGGGGAATAAACCCTATGAAAAGTCTTTTAGTACATG 590
Query 653 TCATGCATCTTCAAATGTAAATTTGATTTCACCAGATCTAAAA 695
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCATGCATCTTCAAATGTAAATTTGATTTCACCAGATCTAAAA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26914779402
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5