BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15940.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493291 jgi|Araly1|493291|fgenesh2_kg.7__2724__AT4G15940.1 1304 0.0
Ahg479137 jgi|Araly1|479137|fgenesh2_kg.3__1838__AT3G16700.1 689 0.0
> Ahg493291 jgi|Araly1|493291|fgenesh2_kg.7__2724__AT4G15940.1
Length=914
Score = 1304 bits (706), Expect = 0.0
Identities = 843/905 (93%), Gaps = 26/905 (3%)
Strand=Plus/Plus
Query 58 TGTATCGATCAG-AAAATGGCGACGTCGATGATACAGAGGATGTTCAAGCAAGGGACGAA 116
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 20 TGTATCGATCAGAAAAATGGCGACGTCGATGATACAGAGGATGTTTAAGCAAGGCACGAA 79
Query 117 GATCGTCTGCGTCGGCCGTAACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTCCC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 80 GATCGTCTGCGTCGGCCGTAACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTTCC 139
Query 177 CAAGGAACCAGTTATATTCTTGAAGCCAACATCATCATACTTAGAAAATGGAGGAACAAT 236
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 140 CAAGGAACCAGTTATATTCTTGAAGCCAACATCGTCGTATTTGGAAAATGGAGGAACAAT 199
Query 237 TGAGATCCCACATCCTTTGGATTCACTTCACCATGAAGTAGAACTCGCTTTAGTGATTGG 296
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 200 TGAGATCCCACATCCTTTGGATTCACTTCACCATGAAGTGGAACTTGCTTTAGTGATTGG 259
Query 297 ACAGAAAGCTAGAGATGTACCTGAATCAATAGCCATGGATTACATTGGAGGATATGCGGT 356
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 260 ACAGAAGGCTAGAGATGTACCTGAATCAATAGCTATGGATTACATTGGAGGATATGCGGT 319
Query 357 TGCTCTTGATATGACTGCTAGGGAACTCCAAGCTTCTGCTAAGGCATCTGGTCTCCCATG 416
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 320 TGCTCTTGATATGACGGCTAGGGAACTCCAAGCTTCCGCCAAGGCATCTGGTCTCCCATG 379
Query 417 GACGGTTGCGAAAGGACAAGATACCTTCACTCCTATCAGCTCTGTTCTGCCAAAGGCGAT 476
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 380 GACGCTTGCTAAAGGACAAGATACCTTCACTCCTATAAGCTCTGTTCTGCCAAAGGCGAT 439
Query 477 GGTGCGTGATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAA 536
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GGTGCATGATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAA 499
Query 537 GGGTTTGACCAAAGATATGATATTCAAGGTCCCCTACCTCATTAGCTACATAAGTTCTAT 596
||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 500 GGGCTTGACAAAAGATATGATCTTCAAGGTCCCGTACCTCATCAGCTACATAAGTTCTAT 559
Query 597 AATGACCCTTTACG--G-AGATGTCATCTTGACAGGCACACCAGAAGGTGTTGGACCTGT 653
|||||||||||||| | ||| ||||| | | |||||||||||||||||||||||||||
Sbjct 560 AATGACCCTTTACGAAGGAGACGTCAT-T--ATAGGCACACCAGAAGGTGTTGGACCTGT 616
Query 654 AAAGATAGGTCAGAAGATAACGGCCGGAATCACCGGTCTATCTGAAGTTCAATTCGATGT 713
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 617 AAAGATAGGTCAGAAGATAACGGCCGGGATCACCGGTCTATCTGAAGTTCAGTTCGATGT 676
Query 714 GGAGAGGCGTGTAAAGCCCTTGAGCTAATAAGTGGTTTTATTTATCTTTCATACAAAAAT 773
|||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |
Sbjct 677 GGAGAGGCGTGTAAAGCCCTTGAGCTAAGAAGTGGTTTTATTTTTCT--CATACAAAA-T 733
Query 774 GTCAATTTTATAAAAGCATCTCTAAAATTTTCATCACTTAC--TGTGTTTCCT-A-A--- 826
||||||||||||||||||||||||| |||||||||||||| |||||||||| | |
Sbjct 734 GTCAATTTTATAAAAGCATCTCTAA--TTTTCATCACTTACACTGTGTTTCCTTACACTT 791
Query 827 -GGAAGGGAGAAATAAAACTCGTTACTCATTTTATTTGTAATCTCTATAACAATGGCTCT 885
|||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||
Sbjct 792 AGGAAGGGAGAAATAAAACTCGT-ACTCCTTTCATTTGTAATCTCTAAAACAATGGCTCT 850
Query 886 AAGACCGGTTTAAATTGTTTATATGGGA-G--AGTATTT-GTAAAGTTGTGATATTTACT 941
||||| |||||| |||||||||| |||| | ||||||| | |||||||||||||||| |
Sbjct 851 AAGACTGGTTTAGATTGTTTATACGGGATGGGAGTATTTCG-AAAGTTGTGATATTTATT 909
Query 942 GTTGG 946
|||||
Sbjct 910 GTTGG 914
> Ahg479137 jgi|Araly1|479137|fgenesh2_kg.3__1838__AT3G16700.1
Length=722
Score = 689 bits (373), Expect = 0.0
Identities = 582/681 (85%), Gaps = 21/681 (3%)
Strand=Plus/Plus
Query 70 AAAATGGCGACGTCGATGATACAGAGGA-TGTTCAAGCAAGGGACGAAGATCGTCTGCGT 128
||||||||||| |||||||| |||| || ||||||||||||| || ||||||||| ||||
Sbjct 9 AAAATGGCGACTTCGATGATTCAGA-GATTGTTCAAGCAAGGCACAAAGATCGTCGGCGT 67
Query 129 CGGCCGT-AACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTCCCCAAGGAACCAG 187
|| | | || ||||| | |||||||||||||| ||||||||| |||| |||| ||| |
Sbjct 68 TGGAC-TCAATTACGCTTCCCACGCCAAAGAACTTGGCAACGCCCTCCCAAAGG-ACCCG 125
Query 188 -TTATATTCTTGAAGCCAACATCATCATACTTAGAAAATGGAGGAACAATTGAGATCCCA 246
|| | |||||||||||||| || || ||| | ||||| || |||||||| |||||||||
Sbjct 126 ATTGTGTTCTTGAAGCCAACCTCTTCGTACCTGGAAAACGGTGGAACAATAGAGATCCCA 185
Query 247 CATCCTTTGGATTCACTTCACCATGAAGTAGAACTCGCTTTAGTGATTGGACAGAAAGCT 306
|||||| ||||||||||||||||||| || ||||| ||| |||||||||||||||||||
Sbjct 186 CATCCTCTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTGATTGGACAGAAAGCA 245
Query 307 AGAGATGTACCTGAATC-AATAGCCATGGATTACATTGGAGGATATGCGGTTGCTCTTGA 365
|||||||| || ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 246 AGAGATGTTCCAGAA-CGGTTAGCCATGGATTACATTGGAGGATATGCGCTTGCTCTTGA 304
Query 366 TATGACTGCTAGGGAACTCCAAGCTTCTGCTAAGGCATCTGGTCTCCCATGGACGGTTGC 425
||||||||||||||||||||||| |||||| | |||||||||||||||||| ||| ||||
Sbjct 305 TATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGCTTGC 364
Query 426 GAAAGGACAAGATACCTTCACTCCTATCAGCTCTGTTCTGCCAAAGGCGATGGTGC-G-T 483
|||||||| |||||||||||||| |||||||| ||| | |||||||| |||||| | |
Sbjct 365 TAAAGGACAGGATACCTTCACTCCCATCAGCTCCGTTTTACCAAAGGCAATGGTGGTGGT 424
Query 484 G----ATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAAGGG 539
| ||||| |||| || ||||||||||| ||||| |||| ||| ||||||||||| ||
Sbjct 425 GGTGGATCCCAATAACCTGGAACTTTGGCTTAAGGTCGATGATGAGACAAGACAGAAAGG 484
Query 540 TTTGACCAAAG-ATATGATATTCAAGGTCCCCTACCTCATTAGCTACATAAGTTCTATAA 598
|| ||| |||| ||||||| ||||||||||| || ||||| ||||||||||| ||| |||
Sbjct 485 TTGGAC-AAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGCTCTGTAA 543
Query 599 TGACCCTTTAC---GGAGATGTCATCTTGACAGGCACACCAGAAGGTGTTGGACCTGTAA 655
||||||||| | |||||||| || |||||||| |||||||||||| | ||||||||||
Sbjct 544 TGACCCTTTTCAAAGGAGATGTTATATTGACAGGTACACCAGAAGGTATAGGACCTGTAA 603
Query 656 AGATAGGTCAGAAGATAACGGCCGGAATCACCGGTCTATCTGAAGTTCAATTCGATGT-G 714
|||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 604 AGATTGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACGTAG 663
Query 715 GAGAGGCGTGTAAAGCCCTTG 735
| |||||| ||||||| |||
Sbjct 664 GT-AGGCGTATAAAGCCATTG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5