BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15950.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946699 jgi|Araly1|946699|scaffold_702928.1 985 0.0
> Ahg946699 jgi|Araly1|946699|scaffold_702928.1
Length=825
Score = 985 bits (533), Expect = 0.0
Identities = 688/759 (91%), Gaps = 26/759 (3%)
Strand=Plus/Plus
Query 41 TCG-TCTCTCGTAGCAGAAAAATGTCAGAGAAAGGAGGCAAGGGGCTCAAATCCTCTCTC 99
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCGTTCTCTCGTAGCAGCAAAATGTCAGAGAAAGGAGGCAAAGGGCTCAAATCCTCTCTC 60
Query 100 AAGTCCAAAGA------------T---GGAGGGAAGGATGGGAGCTCAACAAAGCTCAAG 144
|| |||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 61 AAATCCAAAGATGGGTTTTTGGTTGCAGGAGGGAAGGATGGGAACTCAACAAAGCTCAAG 120
Query 145 AAGGGTAGAAAAATCCACTTTGATCAACGGACTCCACCTGCTAATTACAAGATTCTCAAT 204
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 121 AAGGGTAGAAAAATCCACTTTGATCAAGGGACTCCACCACCTAATTACAAGATTCTCAAT 180
Query 205 GTTTCTTCTGATCAACAACCATTTCAGAGTTCTGCTGCTAAATG-TGGGAAAAGTGACAA 263
| ||||||||||| || ||||||||||| ||||||||||||| | ||| ||| | |||||
Sbjct 181 GGTTCTTCTGATCCACTACCATTTCAGACTTCTGCTGCTAAA-GTTGGTAAAGGAGACAA 239
Query 264 ACCTACCAAGTCTAGCAAAAACTCTCTGCATTCGTTTGAGCTCAAAGATCTTCCTGAGAA 323
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 ACCTACCAAGTCTAGCAAAAACTCTCTGCAGTCGTTTGAGCTCAAAGATCTTCCTGAGAA 299
Query 324 TGCTGAATGCATGATGGACTGTGAAGCTTTTCAGATATTAGATGGAATTAAGGGACAATT 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TGCTGAATGCATGATGGATTGTGAAGCTTTTCAGATATTAGATGGAATTAAGGGACATTT 359
Query 384 GGTTGGCTTGTCTGAAGATCCGTCAATTAAAATTCCTGTATCTTATGACAGAGCATTGGC 443
|||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 360 GGTTGGGTTGTCTGAAGATCCTTCCATCAAAATTCCTGTATCTTATGACAGAGCATTGGC 419
Query 444 TTATGTTGAGAGTTGTGTTCACTACACAAACCCTCAATCTGTCAGAAAAGTCCTTGAACC 503
|||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 420 TTATGTGGATAGTTGTGTTCATTACTCAAACCCTCAATCTGTCAGAAAAGTCCTTGAACC 479
Query 504 TCTGAAAACGTATGGTATCTCTGATGGCGAGATGTGTGTTATTGCAAATGCTTCTTCAGA 563
||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 480 TCTGAAAACCCATGGTATCTCTGACGGCGAGATGTGTGTGATTGCGAATGCTTCCCCAGA 539
Query 564 GAGCGTAGATGAAGTTCTTGCCTTTATTCCATCGCTGAAGACTAAAAAAGAGGTGATCAA 623
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 TACCGTAGATGAAGTTCTTGCCTTTATTCCATCGCTGAAGGCTAAAAAAGAGGTGATCAA 599
Query 624 TCAACCTCTACAAGATGCATTGGAGGAGCTATCCAAGCTGAAGAAATCGGAATGATGAGC 683
|||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 600 TCAACCCCTACAAGATGCATTGGTGGAGCTAGCCAAGCTGAAGAAATCGGGATGATGAGC 659
Query 684 AGCAGACTGCTGCAGTGAATGGTTCAATGCTAGGAGTAGTTTGCAGGTAGACATCATAAA 743
|| | |||||||||| |||||||||||||||||| |||||||||| || || | ||||
Sbjct 660 AG-A--CTGCTGCAGTCAATGGTTCAATGCTAGGATTAGTTTGCAGCTAAAC-T--TAAA 713
Query 744 ATGTAATTG-CGTCTTTGCCTTTCTCAACATTAACCAAC 781
||||| ||| |||||||||||| |||||||||||| |||
Sbjct 714 ATGTATTTGGCGTCTTTGCCTTCCTCAACATTAAC-AAC 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5