BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15953.1

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946698 jgi|Araly1|946698|scaffold_702927.1                       93.5    8e-19


> Ahg946698 jgi|Araly1|946698|scaffold_702927.1
Length=376

 Score = 93.5 bits (50),  Expect = 8e-19
 Identities = 60/65 (92%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  1   ATGTCGCTGTTACGTTTTGCTATACTTTGCATAATTTTCGTTTCCCTCTTTGGTGTGCAT  60
           ||||||||   ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  27  ATGTCGCTAACACGCTTTGCTATACTTTGCATAATCTTCGTTTCCCTCTTTGGTGTGCAT  86

Query  61  GAATG  65
           |||||
Sbjct  87  GAATG  91



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11446676700


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5