BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15960.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329917 jgi|Araly1|329917|fgenesh1_pm.C_scaffold_7002144 1448 0.0
> Ahg329917 jgi|Araly1|329917|fgenesh1_pm.C_scaffold_7002144
Length=1578
Score = 1448 bits (784), Expect = 0.0
Identities = 997/1100 (91%), Gaps = 13/1100 (1%)
Strand=Plus/Plus
Query 257 TTCTTGTGTAGAAAACTCTCACTTTCACGATTCCGACACCATTTTCCTCTCAGACTCCGT 316
|||||||||||| | ||||||||||||||||||| | | ||| ||||||||||| |||||
Sbjct 4 TTCTTGTGTAGATATCTCTCACTTTCACGATTCCAAAATCATCTTCCTCTCAGATTCCGT 63
Query 317 CGTTTTCTTGGGGAAAACCCAAATCCAACTACCCATTTCTCTACATTACCCGACAATCAA 376
|||||||| ||| |||| ||| |||| || | ||||||| ||||||| ||| ||||||
Sbjct 64 CGTTTTCTCGGGAAAAAACCAGATCCGACGGTCGATTTCTCCACATTACACGAGAATCAA 123
Query 377 ACAAAACGACCAGAG-A-A-GTCGAGACTCGACGGCGTAGAACACAAAACCCTAAAGGTA 433
||||| |||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 124 ACAAACCGACAAGAGAAGATGTCGAGACTCGACGGCGTAGAACACAAAACCCTAAAGGTA 183
Query 434 AATGGCATAAACATGCACGTGGCGGAGAAACCCGGATCCGGATCCGGAGAAGATCCGATC 493
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 184 AACGGCATAAACATGCACGTGGCGGAGAAACCTGGATCCGGATCCGGAGAAGATCCGATC 243
Query 494 ATACTCTTCCTCCACGGATTTCCGGAGCTTTGGTACACGTGGCGACACCAGATGGTTGCG 553
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 244 ATACTCTTTATCCACGGATTTCCGGAGCTTTGGTACACGTGGCGACACCAGATGACCGCG 303
Query 554 CTCTCTTCCTTGGGATACCGTACGATCGCGCCGGATCTTCGTGGGTACGGAGACACAGAA 613
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 304 CTTTCTTCCTTGGGATACCGTACGATCGCGCCGGATCTTAGAGGGTACGGAGACACAGAA 363
Query 614 GCGCCAGAGAAAGTTGAAGACTACACTTACTTAAACGTGG-ACGGAGACGTGGTCGCACT 672
|||| |||| ||||||||||||||||||||||||||||| | |||||| |||| |||||
Sbjct 364 ACGCCGGAGAGAGTTGAAGACTACACTTACTTAAACGTGGTA-GGAGACATGGTGGCACT 422
Query 673 AATCGACGCCGTGACCGGCGGAGACAAGGCGG-TTTCTGTTGTTGGTCATGACTGGGGAG 731
|||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||
Sbjct 423 AATCGACGCCGTGACCGGCGGAGATAAGGCGGTTTTC-GTGGTTGGTCATGACTGGGGAG 481
Query 732 CGATGATTGCGTGGCAGTTGTGTCAATACCGACCTGAGAAAGTCAAGGCTCTGGTCAACA 791
|||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||
Sbjct 482 CGATGATTGCGTGGCAGTTGTGTCTGTACCGACCAGAGAAAGTCAAGGCTTTGGTTAACA 541
Query 792 TGAGCGTACTCTTCTCTCCGAGGAACCCTGTTCGAGTTCCGGTTCCGACACTGAGACACG 851
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 542 TGAGCGTACTCTTTTCTCCGAGGAACCCTGATCGAGTTCCGGTTCCGACACTGAGACATG 601
Query 852 TGTTCGGTGATGATTATTATGTCTGCAGATTTCAGAAAGCTGGAGAGATAGAGACAGAGT 911
| ||| | |||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 602 TCTTCAATAATGATTATTACATCTGCAGATTTCAGAAACCTGGAGAGATAGAGGCAGAGT 661
Query 912 TCAAGAA-GTTGGGAACAGAGAATGTGTTAAAAGAGTTCCTCACATACAAAACCCCTGGA 970
||||||| || ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 662 TCAAGAACATT-GGAACAGAGAATGTGTTGAAAGAGTTCCTCACCTACAAAACGCCTGGA 720
Query 971 CCGCTCAATCTCCCCAAAGACAAATATTTCAAACGCTCAGAAAACGCTGCGTCTGCGTTA 1030
|||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||
Sbjct 721 CCGCTCTATCTCCCCAAAGACAAATATTTCAAACGCGCAGAAAACGCCGCGTTTGCGTTA 780
Query 1031 CCACTGTGGTTAACACAAGAAGACCTTGATTATTACGTCACTAAGTACGAAAACAAAGGC 1090
|||| |||||||||||||||||| || |||||||| || ||||||||||| || ||||||
Sbjct 781 CCACCGTGGTTAACACAAGAAGATCTCGATTATTATGTAACTAAGTACGACAAGAAAGGC 840
Query 1091 TTCACCGGACCCATTAACTACTACCGCAACATTGACCGAAATTGGGAGCTGACTGCACCA 1150
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 TTCACCGGACCCATTAACTACTACCGCAACATTGACCGAAATTGGGAACTGACTGCACCG 900
Query 1151 TGGACCGGTGCTAAGATCCGTGTACCGGTGAAGTTCATAATCGGAGATCAGGATTTGACG 1210
||||||||||||||||||| |||||||||||| || ||| |||||||||| ||||| |||
Sbjct 901 TGGACCGGTGCTAAGATCCATGTACCGGTGAAATTTATAGTCGGAGATCAAGATTTAACG 960
Query 1211 TACAATTTTCCGGGGGCTAAGGAATACATCAACGGTGGCGGTTTCAAGAGAGATGTACCA 1270
|| |||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 961 TATAATTCACCGGGAGCTAAGGAATACATTAACGGTGGCGGTTTCAATAGAGATGTACCG 1020
Query 1271 TTGTTAGACGAAACCGTCGTGCTCAAAGG-ATTGGGACATTTCCTACACGAAGAAAACCC 1329
||| | ||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 1021 TTGCTCGACGAAACCGTCGTGATCAA-GGCATTGGGACATTTCCTACACGAAGAAAACCC 1079
Query 1330 TGACGTGA-TC-AATCAACA 1347
||| || | | ||||||||
Sbjct 1080 TGATGTTAATGGAATCAACA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5