BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15975.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329916 jgi|Araly1|329916|fgenesh1_pm.C_scaffold_7002143 684 0.0
> Ahg329916 jgi|Araly1|329916|fgenesh1_pm.C_scaffold_7002143
Length=729
Score = 684 bits (370), Expect = 0.0
Identities = 577/673 (86%), Gaps = 29/673 (4%)
Strand=Plus/Plus
Query 139 ATGCTCACCACCACAATCTTAATCTTACTCATAGTGATTCTTATGGTCTCTCTCCACCTC 198
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 1 ATGCTCACCACCACAATCTTAATCTTATTCATTGTCATTCTTATGGTCTCTCTCCACCTC 60
Query 199 TACT-ATCGTTGGTATCTCCTCCGTTCTAGCCCCTTCAATCGCACCACCGCTGCAAGTAC 257
|||| | || |||||||||| ||||||||||| |||||| |||||| |||| ||| |||
Sbjct 61 TACTCA-CGATGGTATCTCCACCGTTCTAGCCGCTTCAACCGCACCGCCGCCGCACTTAC 119
Query 258 TTTTTTCACGGATCCTTCCTCCA-------C-T--C--C---TGGTGGCCTTAACCCCTC 302
|| ||| | | |||||||||| | | | | ||||||||||||||||||
Sbjct 120 CTTCTTCGCAAACCCTTCCTCCACCGCCGTCGTCACTACTAGTGGTGGCCTTAACCCCTC 179
Query 303 CATCATCAAATCTCTTCCAATTTTCACGTTCTCCGCCGTAACCGCCC---TTTTCGCAAT 359
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 180 TGTCATCAAATCTCTTCCAATTTTCACGTTCTCCGCCGCAACCGCCCAAAAAAACGCTAT 239
Query 360 GGAATGCT-CCGTTTGCCTCTCGGAGTTCAAAGATAATGAATCGGGTCGGGTTATGCCCA 418
||||| | | ||||||||||||| |||| ||||| ||||||||||| ||| ||||||
Sbjct 240 CGAATG-TGCAGTTTGCCTCTCGGCGTTCGTGGATAACGAATCGGGTCGTGTTTTGCCCA 298
Query 419 ATTGCAAGCATACATTTCACGTTGACTGCATTGATATGTGGTTTCATTCTCATTCCTCTT 478
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 299 ATTGCAAGCACACATTTCACGTTCACTGCATCGATATGTGGTTTCATTCTCATTCCTCTT 358
Query 479 GTCCTCTCTGTCGATCTCTAATCGAACCTTTCGCCGGTGGAGTAAAATCGACGATGGATG 538
|||||||||||||||| |||||||||||||||||||| ||||| |||||| ||| ||| |
Sbjct 359 GTCCTCTCTGTCGATCGCTAATCGAACCTTTCGCCGGAGGAGTGAAATCGGCGACGGAGG 418
Query 539 AAGTCGCGATTTCGATTTCTGACCCGGTTTAC-GGTGACACGAACCATCACGAAGGAACT 597
|||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||
Sbjct 419 AAGTCGCGATTTCGATTTCTGACCCGGTTT-CTGGTGACACGAACCGCCGCGAAGGAACT 477
Query 598 GAGACTACCGGTGATTCGGTTCCTGAAGATTCACAGAGAAAACCGGCAGCGATTGAAATC 657
|||||| ||||| | ||| ||||||||||| | |||||||||||| | ||||||||||
Sbjct 478 GAGACTTCCGGTAACCCGGACCCTGAAGATTCCCGGAGAAAACCGGCGGTGATTGAAATC 537
Query 658 TCACAGAGGAATCTCGGAGAAATAGAGAATGATTTGTCTCGGAGTCACTCGTTTAGATCA 717
||| |||||||| ||||||||| ||||| |||||| ||| ||||| || |||||||||
Sbjct 538 CCACGGAGGAATCACGGAGAAATGGAGAACGATTTGACTCCAAGTCAATCATTTAGATCA 597
Query 718 CCGACCGATGAGCCGGATGATATCTTTCACTCGGAATTTGAGTCGAGATCTGGAGAAGTG 777
|||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 CCGA----TGAGCCGGGTGATATCTTTCACTCGGAATTTGAGTCGAGATC-GGAGAAGTG 652
Query 778 cttcttcttcttc 790
|||||||||||||
Sbjct 653 CTTCTTCTTCTTC 665
Score = 82.4 bits (44), Expect = 6e-15
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 826 CGGTCAGTAGCATGCAAGTGACTGAGTTAGATATCGAATTGGGAGGAGAAGAGACTCGTT 885
||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 668 CGGTCTGTAGCATGCCGGTGAGGGCGTTAGATATCGAATTGGGAGGAGAAGAGACTCGTT 727
Query 886 GA 887
||
Sbjct 728 GA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5