BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15980.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890667 jgi|Araly1|890667|Al_scaffold_0007_2653 1775 0.0
> Ahg890667 jgi|Araly1|890667|Al_scaffold_0007_2653
Length=2142
Score = 1775 bits (961), Expect = 0.0
Identities = 1175/1275 (92%), Gaps = 27/1275 (2%)
Strand=Plus/Plus
Query 838 TCTTCCAAGAATCAACAAATGGAATCTTCCGAAGATAC-TCCTAAAAAATCGGCATT-TT 895
|||||| ||||||||| | | || ||||||| | | || |||| |||||||| | || ||
Sbjct 889 TCTTCCGAGAATCAACCACTAGATTCTTCCG-ATAAACTTCCTCAAAAATCGAC-TTCTT 946
Query 896 CAGGGAATCAACCATTAGACGACTCTTCCGATA--AACTTCCTCAAAAATCGACTTCTTC 953
| | |||||| ||||| | || |||| || | || |||||||||||| |||||| |
Sbjct 947 CTGAGAATCAGCCATT-G--GATTCTTTAGAGAGTAA--TCCTCAAAAATCAACTTCTAC 1001
Query 954 TGAGAACCAACCGTTGGATTCCTCCGAGAACCCTCCTCAAAAATC-AACTTCTAGCGA-G 1011
||||| | ||||||||| |||| | ||||||| || | |||| | |
Sbjct 1002 CGAGAATCGACCGTTGGA-TCCT------A-----CTCAAAATTCGGA-TTCT-TCCATT 1047
Query 1012 AATCGACCGTTGGATCCTCTTCGCAAATTGAATCCCCTTAATAAATTGGATTCTTTGAAG 1071
| |||||| |||||||||||| | ||||| ||||||||||||||||||||||||| |||
Sbjct 1048 ATTCGACCATTGGATCCTCTTAGAAAATTAAATCCCCTTAATAAATTGGATTCTTCAAAG 1107
Query 1072 GATCGACACTTATCGGAGGAAGGAGAGTTCCCGCCATGGGTAACACCGCATTCGCGGAGG 1131
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 1108 GATCGACACTTATCGGAGGAAGGAGAGTTCCCACCATGGGTAACACGGCATTCGCGAAGG 1167
Query 1132 CTTCTTGCACGTAGACCTAGAAATAATGGAATCAAAGCGAATGTTGTGGTTGCAAAGGAC 1191
|||||||||||| ||||||||||||||||||||| |||| | |||||||||||||| |||
Sbjct 1168 CTTCTTGCACGTGGACCTAGAAATAATGGAATCAGAGCGGACGTTGTGGTTGCAAAAGAC 1227
Query 1192 GGGAGTGGTAAGTGCAAGACTATCGCACAAGCATTGGCAATGGTACCAATGAAGAACACA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GGGAGTGGTAAGTGCAAGACTATCGCACAAGCATTGGCAATGGTACCAATGAAGAACACA 1287
Query 1252 AAGAAGTTTGTGATTCACATAAAGGAAGGTGTTTACAAGGAGAAAGTAGAGGTAACCaaa 1311
|| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1288 AAAAAGTTTGTAATTCACATAAAGCAAGGTGTTTACAAGGAGAAAGTAGAGGTAACCAAA 1347
Query 1312 aaaaTGCTACACGTCATGTTCGTTGGAGACGGACCAACAAAGACGGTTATCACTGGAGAC 1371
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1348 AAAATGCTTCACGTCATGTTCGTTGGAGACGGACCAACAAAGACGATTATCACTGGAGAC 1407
Query 1372 ATTGCCTTCTTACCAGACCAAGTCGGCACCTACCGCACCGCCTCCGTTGCGGTGAATGGG 1431
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1408 ATTGCCTTCTTACCAAACCAAGTCGGCACCTACCGCACTGCCTCCGTTGCGGTGAATGGG 1467
Query 1432 GACTATTTCATGGCAAAGGATATAGGGTTCGAGAACACGGCAGGAGCTGCACGCCATCAA 1491
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1468 GACTATTTCATGGCAAAGGACATAGGGTTCGAGAATACGGCAGGAGCGGCACGCCATCAA 1527
Query 1492 GCAGTCGCACTCCGAGTTTCAGCCGACTTTGCTGTGTTCTTCAACTGTCATATGAATGGT 1551
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1528 GCAGTCGCACTACGAGTTTCAGCCGATTTTGCTGTGTTCTTCAACTGTCATATGAATGGT 1587
Query 1552 TACCAAGACACGCTTTACGTCCATACTCATCGTCAATTCTACCGTAACTGCCGTGTCTCA 1611
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1588 TACCAAGACACGCTTTACGTCCACACTCATCGTCAATTCTACCGTAACTGCCGCGTCTCA 1647
Query 1612 GGCACGATCGATTTCGTCTTCGGTGACGCCAAGGCCGTTTTTCAGAACTGCGAATTCGTT 1671
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1648 GGCACCATTGATTTCGTCTTCGGTGATGCCAAGGCCGTTTTTCAGAACTGCGAATTCGTT 1707
Query 1672 ATCCGCCGTCCCATGGAACACCAACAGTGCATCGTCACAGCACAAGGACGAAAAGACCGG 1731
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1708 ATCCGCCGTCCCATGGAACACCAACAGTGCATAGTCACAGCACAAGGACGAAAAGACCGG 1767
Query 1732 CGTGAGACAACTGGGATTGTTATCCACAATAGCCGTATAACCGGTGATGCATCATATCTT 1791
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 CGTGAGACGACTGGGATTGTTATCCACAATAGCCGTATAACCGGTGATGCATCATATCTT 1827
Query 1792 CCCGTGAAAGCCAAGAACAGAGCATTTTTGGGACGGCCATGGAAAGAGTTTTCGAGGACA 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 CCCGTGAAAGCCAAGAACAGAGCATTTTTGGGACGGCCATGGAAAGAGTTTTCGAGGACA 1887
Query 1852 ATTATAATGAACACAGAGATTGATGATGTGATAGACCCGGAAGGTTGGTTGAAGTGGAAC 1911
|| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1888 ATCATAATGAATACAGAGATTGATGATGTGATAGACCCAGAGGGTTGGTTGAAGTGGAAC 1947
Query 1912 GAGACGTTTGCGCTCAACACGTTGTTCTACACTGAGTACCGCAACAGAGGTCGTGGTTCG 1971
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 GAGACGTTCGCGCTCAACACGTTGTTCTACACTGAGTACCGCAACAGAGGTCGTGGTTCG 2007
Query 1972 GGTCAGGGTCGTCGGGTTAGGTGGAGAGGTATCAAGCGGATCTCTGATAGAGCCGCAAGG 2031
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2008 GGTCAGGGTCGTCGGGTTAGGTGGAGAGGTATCAAGCGGATCTCTGATAGAGTCGCAAGG 2067
Query 2032 GAGTTTGCTCCCGGGAATTTCTTACGTGGCAACACATGGATCCCACAAACGCGTATTCCA 2091
||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||| ||
Sbjct 2068 GAGTTTGCTCCCGGGAATTTCCTACGTGGCAACACGTGGATACCACAGACGCGTATACCT 2127
Query 2092 TACAATGCTAACTGA 2106
|| ||||||||||||
Sbjct 2128 TATAATGCTAACTGA 2142
Score = 1386 bits (750), Expect = 0.0
Identities = 939/1031 (91%), Gaps = 10/1031 (1%)
Strand=Plus/Plus
Query 1 ATGAATAAATATGTCTTGTTAGGCGTCACGGCTCTCATTATGGCAATGGTCATTTGTGTA 60
||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAAGAAATATGTCTTGTTAGGCCTCACGGCTCTCCTTATGGCAATGGTCATTTGTGTA 60
Query 61 GAGGCCAACGATGGCAACAGCCCGAGTAGGAAAATGGAAGAGGTTCACCGTGAAAGCAAG 120
|||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 61 GAGGCCAACGATGGCAGCAGCCCGAGTAGAAAAATGGAAGAGATTCACCGTGAAAGCAAG 120
Query 121 CTGATGATAACAAAGACGACGGTGAGTATTATATGTGCCTCCACCGATTACAAACAAGAT 180
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 121 CTGATGATAACAAAGACGGCGGTGACTATTATATGTTCCTCCACCGATTACAAACAAGAT 180
Query 181 TGCACCACGAGTCTCGCAACCGTGAGGTCGCCGGATCCCCGAAATCTAATAAGATCTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCACCACGAGTCTCGCAACCGTGAGGTCGCCGGATCCCCGAAATCTAATAAGATCTGCT 240
Query 241 TTTGACCTTGCTATCATCTCGATTCGAAGTGGAATCGACAGAGGGATGATTGATCTAAAG 300
|| || || |||||| |||| ||| |||||||||| ||||| |||||||||||||||||
Sbjct 241 TTCGATCTCGCTATCGTCTCAATTAGAAGTGGAATTGACAGGGGGATGATTGATCTAAAA 300
Query 301 AGTAGAGCAGATGCCGATATGCACACAAGAGAA-GCGCTTAATACTTGTAGAGAGCTTAT 359
|||||||| ||||| ||| |||||||||| ||| ||||| ||||||||| ||||||||||
Sbjct 301 AGTAGAGCGGATGCGGATGTGCACACAAG-GAACGCGCTGAATACTTGTCGAGAGCTTAT 359
Query 360 GGATGATGCGATTGATGATCTTCGAAAAACGAGGGATAAATTTAGGGGATTTTTGTTCAC 419
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 GGATGATGCAATTGATGATCTTCGAAAAACGAGAGATAAATTTAGGGGATTTTTGTTCAC 419
Query 420 TAGATTGTCAGACTTCGTTGAGGATCTTTGTGTGTGGCTTAGCGGATCAATCACATACCA 479
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 420 AAGATTGTCAGACTTTGTTGAGGATCTTTGTGTGTGGCTCAGTGGATCAATCACATACCA 479
Query 480 ACAGACGTGCATTGATGGATTTGAAGGGATTGATAGTGAAGCGGCCGTGATGATGGAGAG 539
|||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 480 ACAGACGTGCATCGATGGATTTGAAGGGATAGATAGCGAAGCGGCCATGATGATGGAGAG 539
Query 540 AGTCATGAGGAAGGGGCAGCATCTCACTAGCAATGGATTGGCGATTGCCGCAAATCTCGA 599
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGTCATGAGGAAGGGGCAGCGTCTCACTAGCAATGGATTAGCGATTGCCGCAAATCTCGA 599
Query 600 TAAATTATTGAAGGCTTTCCGTATTCCATTTCCATTTCTTAGGTCAAGAAGAGGCAGACT 659
||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 600 TAAGTTATTGAAGGCTTTTCGTATTCCATTTCCATTTCTCAGGTCAAGAAGAGACAGACT 659
Query 660 CGGCATTTTAGGTTCGGGTTCTTCACGAGACGAATCGGTGGGTTCTTCCCAAGATTCCCC 719
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 660 CGGCATTTTAGGTTCAGGTTCTTCACGAGACCAATCTGTGGGTTCTTCCCAAGATCCCCC 719
Query 720 TCCAAATGAAGATTCTTCTGATGATTCTCCTAGCACAGTGGACTCTTCGGAGAATCAACC 779
|||||||| |||||||||||| ||||||||| ||| |||| || |||||||||| |||
Sbjct 720 TCCAAATGTGGATTCTTCTGATAATTCTCCTAAAACAATGGAGTCCTCGGAGAATCGACC 779
Query 780 AGTGGATTCTTCATCAGAAAATCAGTCGTCGGACTCTTCAAATAATAGACCATTAGATTC 839
| ||||||| | ||||| |||| | ||||||| ||||||||||||||||| || |||||
Sbjct 780 ATTGGATTC--C-TCAGAGAATCGGCCGTCGGATTCTTCAAATAATAGACCGTTGGATTC 836
Query 840 TTCCAAGAATCAAC-AAATGGAATCTTCCGAAGATACTCCTAAAAAATCGGCATTTTCAG 898
|||| |||||| || ||| ||||||||||||| || ||||| |||||| | ||| ||| |
Sbjct 837 TTCCGAGAATCGACCAAA-GGAATCTTCCGAAAATTCTCCTCAAAAATTGACATCTTCCG 895
Query 899 GGAATCAACCATTAGACGACTCTTCCGATAAACTTCCTCAAAAATCGACTTCTTCTGAGA 958
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGAATCAACCACTAGAT---TCTTCCGATAAACTTCCTCAAAAATCGACTTCTTCTGAGA 952
Query 959 ACCAACCGTTGGATTCCTCCGAGAACCCTCCTCAAAAATCAACTTCTAGCGAGAATCGAC 1018
| || || |||||||| | |||| |||||||||||||||||||| |||||||||||
Sbjct 953 ATCAGCCATTGGATTCTTTAGAGAGTAATCCTCAAAAATCAACTTCTACCGAGAATCGAC 1012
Query 1019 CGTTGGATCCT 1029
|||||||||||
Sbjct 1013 CGTTGGATCCT 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5