BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16000.1
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493282 jgi|Araly1|493282|fgenesh2_kg.7__2715__AT4G16000.1 776 0.0
Ahg946684 jgi|Araly1|946684|scaffold_702913.1 128 5e-29
> Ahg493282 jgi|Araly1|493282|fgenesh2_kg.7__2715__AT4G16000.1
Length=608
Score = 776 bits (420), Expect = 0.0
Identities = 561/626 (90%), Gaps = 21/626 (3%)
Strand=Plus/Plus
Query 13 TAAAACAAAATACCTTTCTAATC-CT-CTTTAAGCTTCGATGGCAATGGCTCAAAAGGAT 70
|||||||||| |||||||| || || |||| |||||||||||||||||||||||||||
Sbjct 1 TAAAACAAAACACCTTTCT--TCTCTCCTTTCTGCTTCGATGGCAATGGCTCAAAAGGAT 58
Query 71 AGGAATAGATGGGTCGCTCAAAAGGGTTTCGAAATGATTGATAAGCGGCTTCCTTACCGA 130
||||||||||||||||||||||| | |||||||| ||||||| |||||||| |||
Sbjct 59 AGGAATAGATGGGTCGCTCAAAA--G----GAAATGATCGATAAGCCCCTTCCTTATCGA 112
Query 131 TTCTTACCTGATTCAACTGTTAGA-GAACCGGTTGCTTCTCGCCAGACGGAACATATCCA 189
|||| |||||| |||| |||| |||||||||| ||||| || | || ||| ||| ||
Sbjct 113 TTCTCACCTGAGACAAC-CATAGAGGAACCGGTTGTTTCTCACCCGGCGAAACCTATTCA 171
Query 190 CTTCTTTGGTGGTGCCCGGCCTTTTGTAGGTAATCCCAACCCGTTTGAGAGGTCGAAAGG 249
|||||||||||||| ||| |||||||| || ||||||||||||||||||||| | |||||
Sbjct 172 CTTCTTTGGTGGTGACCGTCCTTTTGTTGGAAATCCCAACCCGTTTGAGAGGCCTAAAGG 231
Query 250 ACGGCCTATTACCTGCGACGAGGCGGTCAGACTCTATGGAGGAGTGCTTATAAAGGAATT 309
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACGGCGTATTACCTGCGACGAGGCGGTCAGACTCTATGGAGGAGTGCTTATAAAGGAATT 291
Query 310 TCGTAAATAAGCGGTGTAAACCTCAAGTTATGTTGAAGATGCATGGTGAGTTTGTAAATA 369
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 292 TCGTAAATAAGCGGTGTAAACCTCAAGTT-TA---AAGATGCATGGTGAGTTTGTAAATA 347
Query 370 AGTGTGATACGTTTTATTTCTGCTTTCGGAAAAAGTGCAGACCAACACATATTCTAAAGC 429
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 348 AGTGTGATAAGTTTTATTTCTGCTTTCGGAAAAAGTGCAGACCAACACATATGCTAAAGC 407
Query 430 TTGTTGTAACGGTTTTCACTTAGAATAAGCTTTAGATCACAACCAAGTGTTTGTGTCTGT 489
|||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 408 TTGTTGCCACGGTTTTGACTTAGAATAAGCTTTAGATCATAACCAAGTGTTTGTGTCTGT 467
Query 490 TATGTATCTAGCTAGAAGTACTATATGTTAAAGCTTATGTAATGTAAAATGTTACGGTGC 549
||| |||||||||||| |||||||||||| ||| ||| |||||||||||||||| || ||
Sbjct 468 TATATATCTAGCTAGA-GTACTATATGTTGAAGATTACGTAATGTAAAATGTTATGGCGC 526
Query 550 TATATATGTAAAGATATGCGTCTTTGACTCTTTGTAAACATAAATAAGCATGTATTTAAA 609
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 527 TAT----GTAAACATATGTGTCTTTGACTCTTTGTAAACATAAATAAGCATGTATTCAAA 582
Query 610 GACTTTAATAATCATGTCATATATGC 635
||||||| ||| ||||||||||||||
Sbjct 583 GACTTTACTAAGCATGTCATATATGC 608
> Ahg946684 jgi|Araly1|946684|scaffold_702913.1
Length=449
Score = 128 bits (69), Expect = 5e-29
Identities = 108/127 (85%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 198 GTGGTGCCCGGCCTTTTGTAGGTAATCCCAACCCGTTTGAGAGGTCGAAAGGACGGCCTA 257
|||||||||| |||||| | || || ||| |||||||||| |||||| |||| |||
Sbjct 307 GTGGTGCCCGTCCTTTTATTGGCCATGTTGACCGGTTTGAGAGGCCGAAAGAACGGGCTA 366
Query 258 TTACCTGCGACGAGGCGGT-CAGACTCTATGGAGGAGTGCTTATAAAGGAATTTCGTAAA 316
||| |||||| |||||||| ||| | ||||||||| ||||||||||||||||||||||||
Sbjct 367 TTAGCTGCGATGAGGCGGTCCAG-CGCTATGGAGGGGTGCTTATAAAGGAATTTCGTAAA 425
Query 317 TAAGCGG 323
|||||||
Sbjct 426 TAAGCGG 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23331225204
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5