BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16045.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946680 jgi|Araly1|946680|scaffold_702909.1 697 0.0
Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2 296 2e-79
Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3 180 2e-44
> Ahg946680 jgi|Araly1|946680|scaffold_702909.1
Length=624
Score = 697 bits (377), Expect = 0.0
Identities = 532/607 (88%), Gaps = 9/607 (1%)
Strand=Plus/Plus
Query 549 TGAAGTAACATCCACTCTTTTGATGGATTTCTTGTTTTATAGGTTAAAGTCTCTTGAAGA 608
|||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TGAAGTTACATCCACTATTGTGATGGATTTCTTGTTTTATGGGTTAAAGTCTCTTGAAGA 60
Query 609 AAAACGCAGAAGGCTCGAAACACTTGTAAGAGTGGTCGCAAAAGAAGTGATCAACAGTAA 668
|||| | |||| | |||| ||||| ||| ||||| || | |||| |||| | ||||||
Sbjct 61 AAAATGGAGAAAATTAGAAAGACTTGCAAGCGTGGTTGCGAGAGAATTGATGATCAGTAA 120
Query 669 CCAAAGTGAATCCGCTATGAAGAATCTTGAAGAGGAAACTAAGAAAGAGAGAACAAATGA 728
||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 121 CCAAATTGAATCGGCTATGAAGACTCTTGAAGAGGAAACTAAGAAGGAGAGAACAAATGA 180
Query 729 TGACAAAGAATTCGCTTTAAAGATTAATGAAGACGAAACTAAGAATGAAAGAACAATTGA 788
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 181 TGACAAAGAATTCGCTTTAAAGATCAAAGAAGACGAAACTAAGAATGAAAGAACAATTGA 240
Query 789 CGCCATGGAATTTGAAGCT-TCAATTGCTTA-TGTGGTCAACGATATGCTTGGT---GTT 843
|||| |||||| ||||| | ||||||| | |||| ||| |||||| ||| | |||
Sbjct 241 TGCCAAAGAATTTCAAGCTCT-AATTGCT-AGTGTGACCAATGATATGTTTGTTCTTGTT 298
Query 844 ACAGATCCGTTGTTACGTCTAGAGAGATTTGTTCTTGCACCATTGCCTGAAATGGGTTCT 903
| | |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 AAAAATCCCATGTTACTTCTAGAGAGATTTGTTCTTGCGCCATTGCCTGAAATGGGTTCT 358
Query 904 CCAAAGCTTCTGCAGGTTTCCAATCTCCGTATACAGCATAATATGGAACCCGATGAGAAG 963
||||||||| |||||||| |||| ||| | |||| |||||||||| | ||||||||||
Sbjct 359 CCAAAGCTTGTGCAGGTTGGCAATGTCCAAACACAGTATAATATGGAGCACGATGAGAAG 418
Query 964 CAATTAGCTGATTATGGTAGATGGGCCTTGGAGGTATTTGTTCTTGACCATATATTCTGC 1023
|||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||
Sbjct 419 CAATTAGCTGATTATGGTAGATGGGCTTTGGAGGTATTTGTTTTTGACTATATCTTCTGC 478
Query 1024 AACAAAATTGAATTCACATATGAAGAAACTATTGCATT-GAAAAGGCAAGAAGAACTTAT 1082
|||||||||||||| | |||||||||||||||||||| |||| |||||||||| |||||
Sbjct 479 AACAAAATTGAATTTGCTTATGAAGAAACTATTGCATTAGAAA-GGCAAGAAGAGCTTAT 537
Query 1083 TCATGAAGAGGAAGCAGAGAAGAACACTAAACTCaaaaaaaCATTTGTTGGTAAAAAAGT 1142
||| ||||| ||| |||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 538 TCAGGAAGAAGAAAAAGAGAAGAACACTAAACTCAAAAAAAAACTTGTTGGAAAAAAAGT 597
Query 1143 GAACTAA 1149
||| |||
Sbjct 598 GAAGTAA 604
> Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2
Length=3428
Score = 296 bits (160), Expect = 2e-79
Identities = 228/260 (88%), Gaps = 7/260 (3%)
Strand=Plus/Plus
Query 68 GGGT-TGATGTTTCCAACTGTCTCTCTTTGTTTCTCTGTGTTGCAAACTACGAAAAACTT 126
|||| |||||||| |||| ||||||||||||||||||||||||| || | |||||||||
Sbjct 466 GGGTGTGATGTTTGCAACCATCTCTCTTTGTTTCTCTGTGTTGCACACCATGAAAAACTT 525
Query 127 CTTCCAGGTTGGAGTCATTTAGCTCAGTTTTCTGTAGCTGTTG-AGAATAAAGATCCGAA 185
|||||||| ||||||||||| ||||||||| || |||||| || |||||||||||| ||
Sbjct 526 CTTCCAGGCTGGAGTCATTTTGCTCAGTTTACTATAGCTG-TGTCGAATAAAGATCCAAA 584
Query 186 GAAATCAAAG-ATTGCAGATACGTTACACCAGTTTTGGAAGAAAGAGCATGATTGGGGAT 244
|||||||||| ||| ||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 585 GAAATCAAAGCATT-CAGATACGTTACACCGGTTTTGGAAAAAAGAACATGATTGGGGAT 643
Query 245 GGAAAAAGTTTATTGAGTTACCTAAATTACAGGATGGATTCATAGATAAGTT-TGACTCT 303
|||||||||||||||||| |||||||||| |||| || ||||||||| | || ||| | |
Sbjct 644 GGAAAAAGTTTATTGAGTCACCTAAATTAAAGGAAGGGTTCATAGATGA-TTATGATTGT 702
Query 304 CTTTCACTTAAAGCTCAAGT 323
||| || |||| ||||||||
Sbjct 703 CTTACAATTAAGGCTCAAGT 722
> Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3
Length=3532
Score = 180 bits (97), Expect = 2e-44
Identities = 165/198 (83%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 131 CAGGTTGGAGTCATTTAGCTCAGTTTTCTGTAGCTGTTG-AGAATAAAGATCCGAAGAAA 189
|||| ||||||||||| ||||||||| || || ||| || |||||||||| ||||||
Sbjct 571 CAGGCTGGAGTCATTTCGCTCAGTTTACTATATCTG-TGTTGAATAAAGATATAAAGAAA 629
Query 190 TCAAAGATTGCAGATACGTTACACCAGTTTTGGAAGAAAGAGCATGATTGGGGATGGAAA 249
| ||| || ||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 630 ACGAAGTTTTCAGATACACTGCACCGGTTTTGGAAGAAAGAGCATGATTGGGGATGGAAA 689
Query 250 AAGTTTATTGAGTTACCTAAATTACAGGATGGATTCATAGATAAGTT-TGACTCTCTTTC 308
|||||||| ||||||||||| ||| |||| || ||||||||| | || || || |||| |
Sbjct 690 AAGTTTATGGAGTTACCTAAGTTAAAGGACGGGTTCATAGATGA-TTCTGGCTGTCTTAC 748
Query 309 ACTTAAAGCTCAAGTTCA 326
| || | |||||||||||
Sbjct 749 AATTGAGGCTCAAGTTCA 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5