BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16060.1
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493280 jgi|Araly1|493280|fgenesh2_kg.7__2713__AT4G16060.1 1243 0.0
> Ahg493280 jgi|Araly1|493280|fgenesh2_kg.7__2713__AT4G16060.1
Length=1068
Score = 1243 bits (673), Expect = 0.0
Identities = 840/917 (92%), Gaps = 26/917 (3%)
Strand=Plus/Plus
Query 6 TTCGTCTTCGTCTCCAATGATTG----CTC--TCTCACTCTCAGTCTCACTCACATCATT 59
||| ||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||
Sbjct 1 TTCTTCTTCTTCTCCAATGATTGTTCTCTCAGTCTCAGTCTCACTCTCACTCACATCATT 60
Query 60 ACCATTCTCCTT-CGCGTTTTCATCGACTCCGTGCAAATCACGCGCCTCTCCTCCACGTA 118
|||||||| ||| |||| |||| ||||| |||||||| |||| ||||||||||||||||
Sbjct 61 ACCATTCT-CTTACGCGCTTTCCCCGACTACGTGCAAACCACGTGCCTCTCCTCCACGTA 119
Query 119 GCACCGTCTCGTTGAGTTCTTCCAGGAGACGACAAGATCGCCGGCGATCAATTGAGGCTA 178
||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 120 GCACCGTCTCGTTAATTTCTTCCAGGAGACGACAGGATCGCCGCCGATCAATTGAGGCTG 179
Query 179 TG--TC------T-CA-GG-T--GA-----TGGAATTGGAAGATGAATCCGATTTCGAGA 220
|| || | || || | || ||||||||||||||||||| ||||||||||
Sbjct 180 TGTCTCGTGATATCCATGGTTCCGATTTGTTGGAATTGGAAGATGAATCTGATTTCGAGA 239
Query 221 AGCTTCTCTCATCGGATAATCGGATCTCGATCACTGGATTCGGTTCTCTTCTCTCCGAGA 280
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 240 AGCTTCTCTCATCTGATAATCGGATCTCCATCACTGGCTTCGGTTCTCTTCTCTCCGAGA 299
Query 281 GAAGCGCGAGGAGTACATTCCCAGATTTGGAGAATTTCAGAATCGCGAAATTGCAAGGAT 340
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GAAGCGCGAGGAGTACATTTCCAGATTTGGAGAATTTCAGAGTCGCGAAATTGCAAGGAT 359
Query 341 TCAGAAGAGTTTTCGCTCATTCTGCTCCGATCTTCTTCGAGCGTGGCATCGCGAATCCTG 400
|| || ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 360 TCCGACGAGTTTTCGCTCACTCCGCTCCCATCTTCTTCGAGCGTGGAATCGCGAATCCTG 419
Query 401 AAACTAAGGAGATCTCAAGCTTGAGTGTTGAGCCATGTGAAGGAGAGAGCCTTGTGGTTA 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAACTAAGGAGATCTCAAGCTTGAGTGTTGAGCCATGTGAAGGAGAGAGCCTTGTGGTTA 479
Query 461 CTGTCTTCGAGATCAAAAGCTCAGAGATTCCGGCTTTTATTGGAAGGGAGCTTGAGTTCC 520
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 480 CTGTCTTTGAGATCAAAAGCTCAGAGATTCCGGCTTTTATTCGAAGGGAGCTTGAATTCC 539
Query 521 GGTTTCTCGCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATTCTGCGGTAC 580
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 GGTTTCTTGCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATCCTGCGGTAC 599
Query 581 TTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAAGGAAACAAAGGGA 640
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 600 TTTGTGCTCGATACAGTGATGAGGAGTTCTTCCAGATTAGATGCAAAGGAAACAAAGACA 659
Query 641 TTTACTTTCAACATTATGGAAGATTCAAGATCGATAAGATATGGCGGGACGACATCTTAC 700
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 660 TTTACTTTCAACATTATGGAAGATTCAACATCGAGAAGATTTGGCGGGACGACATCTTAC 719
Query 701 CTTGTCGTCTCTATCTAAGACACTGTGTGTTGGCTGCTAAGAATCTGGGAGATGAAGCTT 760
||||||||||||||||||| || ||||||||||||||||| || || |||||||||||||
Sbjct 720 CTTGTCGTCTCTATCTAAGGCATTGTGTGTTGGCTGCTAAAAACCTAGGAGATGAAGCTT 779
Query 761 ACAATAACTTTCTGGATCATACATTCTTGGGAGATCGAAAAACAACCATCAGAGAGTATT 820
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 ACAATAACTTTCTGGACCATACATTCTTGGGAGATCGAAAAACGACCATCAGAGAGTATT 839
Query 821 TAAGCAGCACAGGGTCTGGTATCATGGAAGAAGAACCACCGGAGGCTCTAAAGTCTAGAT 880
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct 840 TAAGCAGCACAGGGTCTGGTATCATGGAAGAAGAGCCACCAGAGGCTCTCAAGTCAAGAT 899
Query 881 ATGGAGGTTGATCAAAA 897
|||||||||||||||||
Sbjct 900 ATGGAGGTTGATCAAAA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40867767024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5