BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16070.1 Length=2288 Score E Sequences producing significant alignments: (Bits) Value Ahg493279 jgi|Araly1|493279|fgenesh2_kg.7__2712__AT4G16070.1 3511 0.0 > Ahg493279 jgi|Araly1|493279|fgenesh2_kg.7__2712__AT4G16070.1 Length=2253 Score = 3511 bits (1901), Expect = 0.0 Identities = 2171/2294 (95%), Gaps = 47/2294 (2%) Strand=Plus/Plus Query 1 AACGATTCTCGCTTTCCTTCTCTCAACGTTCCCGGGGAATTCCCAAATCGG-CTTGAAAT 59 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1 AACGATTCTCGCTTTCC-TCTCTCAACGTTCCCGGGGAATTCCCAAATCGGAATTGAAA- 58 Query 60 TTTTGGAGAAATTGGAGCTTCGATTCATTCATTTATG-AGGATCTCTGATGATTAGTTTC 118 |||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 59 TTTTGGAGAAATCAGAGCTTCGATTCATGCA-TTATGAAGGATCTCTGATGATTAGTTTC 117 Query 119 GAAATTCGTGAAGACATCTTCGTCCTTGCTTTCGAATCGCTGAATCGTGTTACGTTTTCT 178 |||||||||||||| | | | |||||||||||||| ||||||||||| Sbjct 118 GAAATTCGTGAAGA-A---------AT-C-TTCGAATCGCTGAA-----TTACGTTTTCT 160 Query 179 AGATTCGGCTGAGGAGTGAAATTGGATTTTTGAATCGATTTCTGAATAAAGAGGAAGAGG 238 |||||||||||||||||||||||||| | || | | ||||| |||| Sbjct 161 AGATTCGGCTGAGGAGTGAAATTGGA-----G----GA-----G---GAGGAGGAGGAGG 203 Query 239 ATCGGAGATGGCGGCGGGTGTAATGGTAACGGCCACGGGAGCAGTGGTGATTCTGTACTT 298 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 204 ATCGGAGATGGCGGCGGGTGTAATGGTGACGGCGACGGGAGCAGTGGTGATTCTGTACTT 263 Query 299 ACTGAGCCGTCGGATCGTGTGGGCGAGAAATGGAGAAGATGATTCAGGAGGTGAATTGGG 358 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 264 ACTGAGCCGTCGGATCGTGTGGGCGAGAAATGGGGAAGATGATTCAGGAGGTGAATTGGG 323 Query 359 TAAATCAGGGAGATCTGGAAGGAGGAGGATTGTTAGGAGACCGGCTCAAGCACCGGCGAC 418 ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| Sbjct 324 TAAATCAGGGAGATCCGGAAGGAGGAGGATTGTTAGAAGACCGGCTCAAGCGCCGGCGAC 383 Query 419 TTGGCTTGAGACTATTTCAACTTTGTCAGAGACGTTACGGTTTACGTATTCAGAGACTCT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 TTGGCTTGAGACTATTTCAACTTTGTCAGAGACGTTACGGTTTACGTATTCAGAGACTCT 443 Query 479 AGGCAAATGGCCTATTGCTGATCTCGCTTTTGGTATTAACTATTTGATGCGTAGGCAGGG 538 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 444 GGGCAAATGGCCTATTGCCGATCTCGCTTTTGGTATTAACTATTTGATGCGTAGGCAGGG 503 Query 539 AAACTTTCCAACTGCTAGTGTTTATGCTGGAAGTAATTGTATAGAGTTAAAAGGACCAGA 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 GAACTTTCCAACTGCTAGTGTTTATGCTGGAAGTAATTGTATAGAGTTAAAAGGACCAGA 563 Query 599 GATTATCATGGATTTGACAGAGTTACTGAGATTTTTGACCCTCTGTATGCTCTTCTCCAA 658 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 564 GATTATCATGGAGTTGACGGAGTTACTGAGATTTTTGACCCTCTGTATGCTCTTCTCCAA 623 Query 659 AAAGCCATTTGCAGTGTTTCTGGAGAGTGCTGGTTATACCCACGAAGATGTCCTTCTTCA 718 ||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||| Sbjct 624 GAAGCCATTTGCCGTGTTTCTGGAGACTGCTGGTTATACTCATGAAGATGTCCTTCTTCA 683 Query 719 GAAGCCTAAAGCAGGGATTATGCAGCCTGCATTCACGATTATACGAGATACCAATTCAAA 778 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 684 GAAGCCTAAAGCAGGGATTATGCAGCCTGCCTTCACAATTATACGAGATACCAATTCAAA 743 Query 779 ATGTATCCTGCTATTGATCCGTGGCACTCATAGCATTAAAGATACATTAACAGCAGCAAC 838 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 744 GTGTCTCCTGCTTTTGATCCGTGGCACTCATAGCATTAAAGATACATTAACAGCAGCAAC 803 Query 839 TGGTGCAGTTGTCCCATTCCATCATTCAGTTTTGCATGATGGTGGACTAAGCAACTTAGT 898 ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 804 TGGTGCAGTGGTCCCTTTCCATCATTCAGTTTTGCATGATGGTGGGCTAAGCAACTTAGT 863 Query 899 TTTAGGTTATGCACATTGTGGAATGGTTGCTGCAGCTCGATGGATTGCTAAACTTAGTGT 958 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 864 TTTAGGTTATGCACACTGTGGAATGGTTGCTGCAGCTCGATGGATTGCTAAACTTAGTGT 923 Query 959 TCCTTGCCTCCTCAAGGCCCTTGATGAGAATCCTAGTTTCAAGGTTCAGATTGTAGGTCA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 924 TCCTTGCCTCCTCAAGGCCCTTGATGAGAATCCTAGTTTCAAGGTTCAGATTGTAGGTCA 983 Query 1019 TTCTCTTGGAGGTGGGACAGCTTCACTTTTAACGTATATTCTTCGGGAGCAAAAAGAGTT 1078 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 984 TTCTCTTGGAGGTGGGACGGCTTCACTTTTAACGTATATTCTTCGGGAGCAAAAAGAGTT 1043 Query 1079 TGCCTCGGCTACCTGTTTCACTTTTGCACCAGCTGCTTGTATGACTTGGGATTTAGCAGA 1138 | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 TTCCTCCGCTACTTGTTTCACTTTTGCACCAGCTGCTTGTATGACTTGGGATTTAGCAGA 1103 Query 1139 ATCAGGCAAGCACTTCATTACTACTATTATCAATGGATCTGATCTAGTCCCAACATTCTC 1198 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 ATCAGGCAAGCAATTCATTACTACTATTATCAATGGATCTGATCTAGTCCCAACATTCTC 1163 Query 1199 TGCTTCTTCAGTCGATGACCTTCGTTCTGAGGTAACCTCGTCCTCATGGTCAAATGACCT 1258 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1164 TGCTGCTTCAGTCGATGACCTTCGTTCTGAGGTAACCTCGTCCTCATGGTCAAATGACCT 1223 Query 1259 ACGTGATCAGGTTGAACACACCAGGGTCCTTAGTGTTGTTTATCGGTCTGCAACTGCTAT 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 GCGTGATCAGGTTGAACACACCAGGGTCCTTAGTGTTGTTTATCGGTCTGCAACTGCTAT 1283 Query 1319 AGGATCTCGTTTGCCTTCTATAGCCAGCGCGAAAGCAAAAGTGGCTGGTGCTGGGGCGAT 1378 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 AGGGTCTCGTTTGCCTTCTATAGCCAGCGCGAAAGCAAAAGTGGCTGGTGCTGGGGCGAT 1343 Query 1379 TCTGCGGCCTGTCTCAAGCGGCACACAGGTCATGCTAAAGCGTGCTCAGGATGTAGCGCA 1438 |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 1344 TCTGCGGCCTGTCTCAAGCGGCACTCAGGTCATGCTGAAGCGTGCGCAGGATGTAGCGCA 1403 Query 1439 AGCCGTTGTGCAGACCCGTTCAACTCTCTCTTCATGGTCTTGCATAGGACCACGCCGTAG 1498 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1404 AGCCGTTGTGCAGACCCGTTCAACTCTCTCGTCTTGGTCTTGCATAGGACCACGCCGTAG 1463 Query 1499 AGCTATTAGCTCTCAGCTTAACTCCAAAGTCACAGACATGCCGGAAGCATCAGCTATTAT 1558 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1464 AGCTATTAGCTCTCAGCTTAACTCTAAAGTCACAGACTTGCCGGAAGCATCAGCTATTAT 1523 Query 1559 GGCTGAAAGAAGAAGCACTGAAGCTCTACTGGCTGAAACTGTAGCGATAGACCGTAAAGG 1618 | |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | Sbjct 1524 GCCTGAAAGAAGAAGCACTGAAGCTCTACTGGCTGAAACTGTAGTGATAGAGCGTAAATG 1583 Query 1619 TCACAAGAGAACAGAACATAGTTCTTCGAGCAGCAGTGAATCTGATCGCGATGAACCAGA 1678 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1584 TCACAAGAGAATAGAACATAGTTCTTCAAGCAGCAGTGAATCTGATCGCGATGAACCAGA 1643 Query 1679 CGAAGAAGAAGAGGAAGAGCCGTTGATATCAATTGATCAAGTCATCGCTGAAACATCTTC 1738 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1644 CGAAGAAGAAGAGGAAGAGCCGTTGATCTCAATTGACCAAGTCATCGCTGAAACATCTTC 1703 Query 1739 AATAGAAGAAGACGTGACAGAAGGTGAGCTATGGGACGAACTGGACAGAGAATTGACTCG 1798 |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| Sbjct 1704 AATAGAAGAAGACGTGACAGAAGGGGAGCTATGGGACGAACTGGACAAAGAGTTGACTCG 1763 Query 1799 ACAGGAGAACGAAAGAGACAGTGAAGCCATGGAGGAAGAAGCGGCAGCAGCAAAGGAGAT 1858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1764 ACAGGAGAACGAAAGAGACAGTGAAGCCATGGAGGAAGAAGCGGCAGCAGCAAAGGAGAT 1823 Query 1859 AACAGAGGAAGAGACTGTCATTACTGGCGGGGGCGATTCCTCCACAGGACAGAACCAGAG 1918 ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1824 AACAGAGGAAGAGACTGTCATTACTGGCGGGGGCGATTCAACCGCAGGACAGAACCAGAG 1883 Query 1919 TCCGGTATCAGCATCTTCAATGGATTTGATAGAGAACCAGCGGTTTTACCCGCCGGGTAA 1978 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1884 TCCGGTTTCAGCATCTTCAATGGACTTGATAGAGAACCAGCGGTTTTACCCGCCGGGTAA 1943 Query 1979 GATAATGCACATAGTGTCAGTAACTGAGACAGAGTCTGAAACAGAGCGTGACGAAGTGGT 2038 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1944 GATAATGCACATAGTGTCAGTAACTGAGACAGAGTCTGAAACAGAGCGTGACGAGGTGGG 2003 Query 2039 GGTAGTGGGAACGACGAC---GGTGGAGCGTGTAAGGATATATGAGACGCCAAGAGAACT 2095 ||| || ||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 2004 GGTGGTTGGAACAACAACTACGGTGGAGCGTGTAAGGATATATGAGACGCCAAGAGAACT 2063 Query 2096 GTACAGAAAGATTAGGCTATCGAGAACAATGATAAACGATCATTATATGCCAATGTATAA 2155 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2064 GTACAGAAAGATTAGGCTATCGAGAACAATGATAAATGATCATTATATGCCAATGTATAA 2123 Query 2156 AAAGATGATGGAACTCTTAATTACTGAGCTCGAGTGTGATTCACACTCGTCATGAGCTCC 2215 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 2124 AAAGATGATGGAACTCTTAATTACTGAGCTCGAGTGTGATCCACACTCTTCATGAGCTCC 2183 Query 2216 CTC-AGCTTCATCATCCTCATCAACTGTACATTATAAATATTTATTATACACAGAGTTTA 2274 || |||||||||||| | |||||||||||||||||||||||||| | ||||||||||| Sbjct 2184 -TCCAGCTTCATCATCATTATCAACTGTACATTATAAATATTTAT-A--CACAGAGTTTA 2239 Query 2275 CTTGTTTTTTCTTC 2288 | |||||||||||| Sbjct 2240 CATGTTTTTTCTTC 2253 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86160134190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5