BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16070.1
Length=2288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493279 jgi|Araly1|493279|fgenesh2_kg.7__2712__AT4G16070.1 3511 0.0
> Ahg493279 jgi|Araly1|493279|fgenesh2_kg.7__2712__AT4G16070.1
Length=2253
Score = 3511 bits (1901), Expect = 0.0
Identities = 2171/2294 (95%), Gaps = 47/2294 (2%)
Strand=Plus/Plus
Query 1 AACGATTCTCGCTTTCCTTCTCTCAACGTTCCCGGGGAATTCCCAAATCGG-CTTGAAAT 59
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AACGATTCTCGCTTTCC-TCTCTCAACGTTCCCGGGGAATTCCCAAATCGGAATTGAAA- 58
Query 60 TTTTGGAGAAATTGGAGCTTCGATTCATTCATTTATG-AGGATCTCTGATGATTAGTTTC 118
|||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 59 TTTTGGAGAAATCAGAGCTTCGATTCATGCA-TTATGAAGGATCTCTGATGATTAGTTTC 117
Query 119 GAAATTCGTGAAGACATCTTCGTCCTTGCTTTCGAATCGCTGAATCGTGTTACGTTTTCT 178
|||||||||||||| | | | |||||||||||||| |||||||||||
Sbjct 118 GAAATTCGTGAAGA-A---------AT-C-TTCGAATCGCTGAA-----TTACGTTTTCT 160
Query 179 AGATTCGGCTGAGGAGTGAAATTGGATTTTTGAATCGATTTCTGAATAAAGAGGAAGAGG 238
|||||||||||||||||||||||||| | || | | ||||| ||||
Sbjct 161 AGATTCGGCTGAGGAGTGAAATTGGA-----G----GA-----G---GAGGAGGAGGAGG 203
Query 239 ATCGGAGATGGCGGCGGGTGTAATGGTAACGGCCACGGGAGCAGTGGTGATTCTGTACTT 298
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 204 ATCGGAGATGGCGGCGGGTGTAATGGTGACGGCGACGGGAGCAGTGGTGATTCTGTACTT 263
Query 299 ACTGAGCCGTCGGATCGTGTGGGCGAGAAATGGAGAAGATGATTCAGGAGGTGAATTGGG 358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 264 ACTGAGCCGTCGGATCGTGTGGGCGAGAAATGGGGAAGATGATTCAGGAGGTGAATTGGG 323
Query 359 TAAATCAGGGAGATCTGGAAGGAGGAGGATTGTTAGGAGACCGGCTCAAGCACCGGCGAC 418
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 324 TAAATCAGGGAGATCCGGAAGGAGGAGGATTGTTAGAAGACCGGCTCAAGCGCCGGCGAC 383
Query 419 TTGGCTTGAGACTATTTCAACTTTGTCAGAGACGTTACGGTTTACGTATTCAGAGACTCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTGGCTTGAGACTATTTCAACTTTGTCAGAGACGTTACGGTTTACGTATTCAGAGACTCT 443
Query 479 AGGCAAATGGCCTATTGCTGATCTCGCTTTTGGTATTAACTATTTGATGCGTAGGCAGGG 538
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GGGCAAATGGCCTATTGCCGATCTCGCTTTTGGTATTAACTATTTGATGCGTAGGCAGGG 503
Query 539 AAACTTTCCAACTGCTAGTGTTTATGCTGGAAGTAATTGTATAGAGTTAAAAGGACCAGA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GAACTTTCCAACTGCTAGTGTTTATGCTGGAAGTAATTGTATAGAGTTAAAAGGACCAGA 563
Query 599 GATTATCATGGATTTGACAGAGTTACTGAGATTTTTGACCCTCTGTATGCTCTTCTCCAA 658
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GATTATCATGGAGTTGACGGAGTTACTGAGATTTTTGACCCTCTGTATGCTCTTCTCCAA 623
Query 659 AAAGCCATTTGCAGTGTTTCTGGAGAGTGCTGGTTATACCCACGAAGATGTCCTTCTTCA 718
||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 624 GAAGCCATTTGCCGTGTTTCTGGAGACTGCTGGTTATACTCATGAAGATGTCCTTCTTCA 683
Query 719 GAAGCCTAAAGCAGGGATTATGCAGCCTGCATTCACGATTATACGAGATACCAATTCAAA 778
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 684 GAAGCCTAAAGCAGGGATTATGCAGCCTGCCTTCACAATTATACGAGATACCAATTCAAA 743
Query 779 ATGTATCCTGCTATTGATCCGTGGCACTCATAGCATTAAAGATACATTAACAGCAGCAAC 838
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GTGTCTCCTGCTTTTGATCCGTGGCACTCATAGCATTAAAGATACATTAACAGCAGCAAC 803
Query 839 TGGTGCAGTTGTCCCATTCCATCATTCAGTTTTGCATGATGGTGGACTAAGCAACTTAGT 898
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 804 TGGTGCAGTGGTCCCTTTCCATCATTCAGTTTTGCATGATGGTGGGCTAAGCAACTTAGT 863
Query 899 TTTAGGTTATGCACATTGTGGAATGGTTGCTGCAGCTCGATGGATTGCTAAACTTAGTGT 958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTTAGGTTATGCACACTGTGGAATGGTTGCTGCAGCTCGATGGATTGCTAAACTTAGTGT 923
Query 959 TCCTTGCCTCCTCAAGGCCCTTGATGAGAATCCTAGTTTCAAGGTTCAGATTGTAGGTCA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TCCTTGCCTCCTCAAGGCCCTTGATGAGAATCCTAGTTTCAAGGTTCAGATTGTAGGTCA 983
Query 1019 TTCTCTTGGAGGTGGGACAGCTTCACTTTTAACGTATATTCTTCGGGAGCAAAAAGAGTT 1078
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TTCTCTTGGAGGTGGGACGGCTTCACTTTTAACGTATATTCTTCGGGAGCAAAAAGAGTT 1043
Query 1079 TGCCTCGGCTACCTGTTTCACTTTTGCACCAGCTGCTTGTATGACTTGGGATTTAGCAGA 1138
| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TTCCTCCGCTACTTGTTTCACTTTTGCACCAGCTGCTTGTATGACTTGGGATTTAGCAGA 1103
Query 1139 ATCAGGCAAGCACTTCATTACTACTATTATCAATGGATCTGATCTAGTCCCAACATTCTC 1198
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 ATCAGGCAAGCAATTCATTACTACTATTATCAATGGATCTGATCTAGTCCCAACATTCTC 1163
Query 1199 TGCTTCTTCAGTCGATGACCTTCGTTCTGAGGTAACCTCGTCCTCATGGTCAAATGACCT 1258
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TGCTGCTTCAGTCGATGACCTTCGTTCTGAGGTAACCTCGTCCTCATGGTCAAATGACCT 1223
Query 1259 ACGTGATCAGGTTGAACACACCAGGGTCCTTAGTGTTGTTTATCGGTCTGCAACTGCTAT 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GCGTGATCAGGTTGAACACACCAGGGTCCTTAGTGTTGTTTATCGGTCTGCAACTGCTAT 1283
Query 1319 AGGATCTCGTTTGCCTTCTATAGCCAGCGCGAAAGCAAAAGTGGCTGGTGCTGGGGCGAT 1378
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AGGGTCTCGTTTGCCTTCTATAGCCAGCGCGAAAGCAAAAGTGGCTGGTGCTGGGGCGAT 1343
Query 1379 TCTGCGGCCTGTCTCAAGCGGCACACAGGTCATGCTAAAGCGTGCTCAGGATGTAGCGCA 1438
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1344 TCTGCGGCCTGTCTCAAGCGGCACTCAGGTCATGCTGAAGCGTGCGCAGGATGTAGCGCA 1403
Query 1439 AGCCGTTGTGCAGACCCGTTCAACTCTCTCTTCATGGTCTTGCATAGGACCACGCCGTAG 1498
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1404 AGCCGTTGTGCAGACCCGTTCAACTCTCTCGTCTTGGTCTTGCATAGGACCACGCCGTAG 1463
Query 1499 AGCTATTAGCTCTCAGCTTAACTCCAAAGTCACAGACATGCCGGAAGCATCAGCTATTAT 1558
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1464 AGCTATTAGCTCTCAGCTTAACTCTAAAGTCACAGACTTGCCGGAAGCATCAGCTATTAT 1523
Query 1559 GGCTGAAAGAAGAAGCACTGAAGCTCTACTGGCTGAAACTGTAGCGATAGACCGTAAAGG 1618
| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
Sbjct 1524 GCCTGAAAGAAGAAGCACTGAAGCTCTACTGGCTGAAACTGTAGTGATAGAGCGTAAATG 1583
Query 1619 TCACAAGAGAACAGAACATAGTTCTTCGAGCAGCAGTGAATCTGATCGCGATGAACCAGA 1678
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1584 TCACAAGAGAATAGAACATAGTTCTTCAAGCAGCAGTGAATCTGATCGCGATGAACCAGA 1643
Query 1679 CGAAGAAGAAGAGGAAGAGCCGTTGATATCAATTGATCAAGTCATCGCTGAAACATCTTC 1738
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1644 CGAAGAAGAAGAGGAAGAGCCGTTGATCTCAATTGACCAAGTCATCGCTGAAACATCTTC 1703
Query 1739 AATAGAAGAAGACGTGACAGAAGGTGAGCTATGGGACGAACTGGACAGAGAATTGACTCG 1798
|||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 1704 AATAGAAGAAGACGTGACAGAAGGGGAGCTATGGGACGAACTGGACAAAGAGTTGACTCG 1763
Query 1799 ACAGGAGAACGAAAGAGACAGTGAAGCCATGGAGGAAGAAGCGGCAGCAGCAAAGGAGAT 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 ACAGGAGAACGAAAGAGACAGTGAAGCCATGGAGGAAGAAGCGGCAGCAGCAAAGGAGAT 1823
Query 1859 AACAGAGGAAGAGACTGTCATTACTGGCGGGGGCGATTCCTCCACAGGACAGAACCAGAG 1918
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1824 AACAGAGGAAGAGACTGTCATTACTGGCGGGGGCGATTCAACCGCAGGACAGAACCAGAG 1883
Query 1919 TCCGGTATCAGCATCTTCAATGGATTTGATAGAGAACCAGCGGTTTTACCCGCCGGGTAA 1978
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1884 TCCGGTTTCAGCATCTTCAATGGACTTGATAGAGAACCAGCGGTTTTACCCGCCGGGTAA 1943
Query 1979 GATAATGCACATAGTGTCAGTAACTGAGACAGAGTCTGAAACAGAGCGTGACGAAGTGGT 2038
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1944 GATAATGCACATAGTGTCAGTAACTGAGACAGAGTCTGAAACAGAGCGTGACGAGGTGGG 2003
Query 2039 GGTAGTGGGAACGACGAC---GGTGGAGCGTGTAAGGATATATGAGACGCCAAGAGAACT 2095
||| || ||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2004 GGTGGTTGGAACAACAACTACGGTGGAGCGTGTAAGGATATATGAGACGCCAAGAGAACT 2063
Query 2096 GTACAGAAAGATTAGGCTATCGAGAACAATGATAAACGATCATTATATGCCAATGTATAA 2155
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2064 GTACAGAAAGATTAGGCTATCGAGAACAATGATAAATGATCATTATATGCCAATGTATAA 2123
Query 2156 AAAGATGATGGAACTCTTAATTACTGAGCTCGAGTGTGATTCACACTCGTCATGAGCTCC 2215
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 2124 AAAGATGATGGAACTCTTAATTACTGAGCTCGAGTGTGATCCACACTCTTCATGAGCTCC 2183
Query 2216 CTC-AGCTTCATCATCCTCATCAACTGTACATTATAAATATTTATTATACACAGAGTTTA 2274
|| |||||||||||| | |||||||||||||||||||||||||| | |||||||||||
Sbjct 2184 -TCCAGCTTCATCATCATTATCAACTGTACATTATAAATATTTAT-A--CACAGAGTTTA 2239
Query 2275 CTTGTTTTTTCTTC 2288
| ||||||||||||
Sbjct 2240 CATGTTTTTTCTTC 2253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86160134190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5