BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16080.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935559 jgi|Araly1|935559|scaffold_403547.1 717 0.0
Ahg493278 jgi|Araly1|493278|fgenesh2_kg.7__2711__AT4G16080.1 640 0.0
Ahg935697 jgi|Araly1|935697|scaffold_403685.1 307 1e-82
> Ahg935559 jgi|Araly1|935559|scaffold_403547.1
Length=1099
Score = 717 bits (388), Expect = 0.0
Identities = 766/938 (82%), Gaps = 67/938 (7%)
Strand=Plus/Plus
Query 393 ACAGAGTTCCTCATGTTGGACCCGGCCAAAGAGGATTATTTCACC-ACCGTTGATAAGCC 451
|||||| ||| |||||| ||||||||||| || || ||||| ||| ||| |||||||||
Sbjct 69 ACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTTACCGTCCG-TGATAAGCC 127
Query 452 ACTTCCCAAAAATTTGATTAAGTCTAAGCTAGTGGGAAGTTCCCATGGATGGGGTGTTTA 511
|||| ||||| | ||| ||| ||| | ||| ||||||||||||||||| ||||| ||||
Sbjct 128 ACTTACCAAAGAGTTGGTTACGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGAGTTTT 187
Query 512 TCTCAGCTCCCCTGATTACATACTAATCAGC-A--ACT---ATCCCTCGAGGTCTAAATC 565
||| |||||||| ||| ||||||||| ||| | ||| |||| ||||| || |||||
Sbjct 188 TCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCATCGAGCTCCAAATC 247
Query 566 AAATCCCAAGATCATTGATCTGCCTCCTCGTCCTAG-TCT-AA-A-TGGTTCTCAAACTG 621
||| |||||||| || |||||||||||| || | | || | | || ||||| ||
Sbjct 248 AAACCCCAAGATGATCCCTCTGCCTCCTCG---AAGTTATGAATACT-CTTGTCAAAATG 303
Query 622 AATTGGTAAGTGGTGTGGCAATGTCCTCTTCTCCTGAAGAGGAAGAATGCATTATTGCTG 681
||||||||||||| |||||||||||||||||||||||||| ||||| | | |||| ||||
Sbjct 304 AATTGGTAAGTGGCGTGGCAATGTCCTCTTCTCCTGAAGAAGAAGACTTCGTTATCGCTG 363
Query 682 TCAAATACATGGGACGTCCGGTGAGTATATATACGCCTGGTCAAGACAGTCAGGGGTTCC 741
|||| | || |||||||| |||||||||||||| ||| |||||| || || ||||| ||
Sbjct 364 TCAAGTTCACGGGACGTCGGGTGAGTATATATAGGCCCGGTCAACACCGTAAGGGGAACC 423
Query 742 TCCTTGC-TAT-GTCCACTAG-ATTATTCGATTATTTTGAGCAATCTAAGTTGATGTATT 798
|| || | | ||| ||| | |||||||||||||||||| ||| | || ||||||||||
Sbjct 424 ACC--GCTTTTCGTCTACT-GAATTATTCGATTATTTTGAACAAGCCAACTTGATGTATT 480
Query 799 CCAAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGG 858
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CCAAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGAGGCCACCACTTGTGGTCTTGGA 540
Query 859 TTGGTCTCCCATCCACC-ACGCCTCAGTACCATGAGTTAAAG-TTTCATAACCTTCCTCA 916
|||| | ||||||| || | |||||||||||| ||| | ||||| ||||||||||
Sbjct 541 ATGGTATAATATCCACCGACTC-TCAGTACCATGACTTAC-GCTTTCACAACCTTCCTCT 598
Query 917 GTTTTCGCATTCCGAGTTGCAGCTTTTC-GATTCTTGTTACAGGGCACA-CGAGCTTGTG 974
|||||| | |||||||||||||||||| ||| ||||||||||| |||| | | ||||||
Sbjct 599 GTTTTCACTTTCCGAGTTGCAGCTTTTGAGAT-CTTGTTACAGGACACAACAA-CTTGTG 656
Query 975 GAGTCTCCTTCAGGACAACGTTTCTTACTCAAATGGTACGTTGAAAGCCCT-G-C-GAAC 1031
|||||||| |||||||| |||||| || |||||||||| ||| ||| |||| | | | |
Sbjct 657 GAGTCTCCCTCAGGACAGCGTTTCCTAGTCAAATGGTATGTTCAAA-CCCTTGGCAGGTC 715
Query 1032 -----AA-G--T--CGT-TAG-T----A---TTCAATTGTGGCGGCACAAAGCGGTTCAT 1072
|| | | || ||| | | |||| || |||||||||||||| |||||
Sbjct 716 TGTTCAAAGCCTTGCGCATAGGTCGGTAAAATTCAGTTTTGGCGGCACAAAGCTATTCAT 775
Query 1073 GGTGTTTAGAGAAGAGGAAGACATGAACATGTGTTACACAGAAGACATTGGTGATCTCTG 1132
|||||| ||||| |||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct 776 GGTGTTCAGAGAGGAGGAAGATATGAACTTGTGTTACACACAAGACATTGGTGATCTCTG 835
Query 1133 CATATTCCTCGGCAACAACGAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCGGGACTAAA 1192
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 836 CATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGCTCCTTCCCGGGCCTAAA 895
Query 1193 CCCTAATTCCATCTATTTCCTCGGTGA-----A-GG------CTACGGTGTTTATGATAT 1240
|||||||||||| |||||||||||||| | || ||| ||| |||| |||||
Sbjct 896 CCCTAATTCCATTTATTTCCTCGGTGACCGTTATGGTGAAGGCTATGGTATTTACGATAT 955
Query 1241 CGCCACTAGATCCCCACGTTCCTTCACA-CCCAAGTCT 1277
||||||||| ||||||||||||||| | |||||||||
Sbjct 956 TGCCACTAGAACCCCACGTTCCTTCA-ATCCCAAGTCT 992
> Ahg493278 jgi|Araly1|493278|fgenesh2_kg.7__2711__AT4G16080.1
Length=1155
Score = 640 bits (346), Expect = 0.0
Identities = 533/614 (87%), Gaps = 49/614 (8%)
Strand=Plus/Plus
Query 34 TTCTTGTGGCCAGGCACTTTGGTCTTAGATCGAGTCAAGAAGGGACTTTC-TTGGTTGAC 92
|||||||||| | |||||||||||||||| | |||||||||||||| ||| || ||||||
Sbjct 1 TTCTTGTGGCTAAGCACTTTGGTCTTAGACCAAGTCAAGAAGGGAC-TTCATT-GTTGAC 58
Query 93 TAACTCGAAAACCCTTTCTTTATTTCTTTTTGATTCTTCAC-TATCAACGCAAAGCTATG 151
|||||||||||||| | ||| ||||| |||||| ||||| |||||| |||||||||||
Sbjct 59 TAACTCGAAAACCC--T-TTT-GTTCTTGTTGATTTTTCACATATCAAAGCAAAGCTATG 114
Query 152 TCGTCTCTGCTTCTCAGATtctcttccaagtcctctctccacaaacttgctctcgtaaat 211
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||
Sbjct 115 TCGTCTCTGCTTCTCAGCTTCTCTTCCAAGTCCTCTCTCCGCAAACTTGCTCTGGTAAAT 174
Query 212 ctcttcaatctctctctgtttctagtttttatataatctctgttttattcttcctcttct 271
|||||||| || |||||||||| ||||||||||| | || ||||||
Sbjct 175 CTCTTCAA------TC----TCTAGTTTTTGTATAATCTCTG------T-TT--TCTTCT 215
Query 272 tctaatgtctACTTCTTTACTCATCCCACAGAGATGT-AACACCTTTAGGATGTTCTCCT 330
|| | | |||| | |||| |||||| || ||| || ||||||||||||
Sbjct 216 TC-----T-T-CTTC--T--TCAT-------AGATGTCAA-ACCCTTCGGATGTTCTCCT 256
Query 331 CCTCAACCACCAACCCTTTTTTGCTGCATCATGCCATCCCTTGTGGTGAAGAAGCCCAAA 390
|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 257 CCTCTACCACCAACCCTTTTTTGCTGCATCGTGCCACCCCTTGTGGTGAAGAAGCCCAAA 316
Query 391 -GAACAGAGTTCCTCATGTTGGACCCGGCCAAAGAGGATTATTTCACCACCGTTGATAAG 449
| ||||||||||||||||| ||||||||||| || || |||||||||| || |||||||
Sbjct 317 TG-ACAGAGTTCCTCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCATCGCTGATAAG 375
Query 450 CCACTTCCCAAAAATTTGATTAAGTCTAAGCTAGTGGGAAGTTCCCATGGATGGGGTGTT 509
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 376 CCACTTCCCAAAGATTTGATTAAGTCTAATCTAGTGGGAAGTTCCCATGGATGGGGAGTT 435
Query 510 TATCTCAGCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGGTCTAAATCAAAT 569
||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 436 TATCTCATCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGCTCCAAATCAAAC 495
Query 570 CCCAAGATCATTGATCTGCCTCCTCGTCCTAGTCTAAATGGTTCTCAAACTGAATTGGTA 629
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 496 CCCAAGATCATTGATCTGCCTCCTCGGCCTAGTCTAAATGGTTCTCAAACGGAATTGGTA 555
Query 630 AGTGGTGTGGCAAT 643
||||||||||||||
Sbjct 556 AGTGGTGTGGCAAT 569
Score = 451 bits (244), Expect = 6e-126
Identities = 279/296 (94%), Gaps = 1/296 (0%)
Strand=Plus/Plus
Query 683 CAAATACATGGGACG-TCCGGTGAGTATATATACGCCTGGTCAAGACAGTCAGGGGTTCC 741
||| ||||||||||| ||| |||||||||||||||||||||| || | | | |||||||
Sbjct 566 CAATTACATGGGACGTTCCTGTGAGTATATATACGCCTGGTCGTGAAACTAAAGGGTTCC 625
Query 742 TCCTTGCTATGTCCACTAGATTATTCGATTATTTTGAGCAATCTAAGTTGATGTATTCCA 801
|||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 626 TCCTGGCAATGTCTACTAGATTATTCGATTATTTTGAGCAATCCAAGTTGATGTATTCCA 685
Query 802 AGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 861
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 AGAGAGATCAAAGATTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 745
Query 862 GTCTCCCATCCACCACGCCTCAGTACCATGAGTTAAAGTTTCATAACCTTCCTCAGTTTT 921
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 746 GTCTCCCATCCACCACACCTCAGTACCATGAGTTAAAGTTTCAAAACCTTCCTCAGTTTT 805
Query 922 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGGCACACGAGCTTGTGGAG 977
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 806 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGACACACGAGCTTGTGGAG 861
Score = 324 bits (175), Expect = 1e-87
Identities = 236/263 (90%), Gaps = 13/263 (5%)
Strand=Plus/Plus
Query 1068 TTC-ATGGTGTTTAGAGAAGAGGAAGACATGAACATGTGTTACACAGAAGACATTGGTGA 1126
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 891 TTCAATTGTGTTTAGAGAAGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGA 950
Query 1127 TCTCTGCATATTCCTCGGCAACAACGAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCGGG 1186
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 951 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAAGCCAGCTCATTCCCGGG 1010
Query 1187 ACTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTA---------C---GGTGTTTA 1234
||||| ||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 1011 CCTAAAACCTAACTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTACGGTGTTTA 1070
Query 1235 TGATATCGCCACTAGATCCCCACGTTCCTTCACACCCAAGTCTACACCAAGTTCCTCCTC 1294
||||||||||||| | ||||||||||||||||||||||||||||||||| || || ||
Sbjct 1071 CGATATCGCCACTAAAACCCCACGTTCCTTCACACCCAAGTCTACACCAAATTGCTGTTC 1130
Query 1295 GGAACAAATAGTCCTCCCTTACT 1317
|||||||||||||||||||||||
Sbjct 1131 GGAACAAATAGTCCTCCCTTACT 1153
> Ahg935697 jgi|Araly1|935697|scaffold_403685.1
Length=796
Score = 307 bits (166), Expect = 1e-82
Identities = 223/248 (90%), Gaps = 14/248 (6%)
Strand=Plus/Plus
Query 1043 ATTCAATTGTGGCGGCACAAAGCGGTTCATGGTGTTTAGAGAAGAGGAAGACATGAACAT 1102
|||||||| ||| ||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 434 ATTCAATTTTGGGGGCACAAAGTTGTTCATGGTGTTTAGAGAGGAGGAAGATATGAACAT 493
Query 1103 GTGTTACACAGAAGACATTGGTGATCTCTGCATATTCCTCGGCAACAACGAGCCTTTTTG 1162
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 494 GTGTTACACAGAAGACATTGGTGATCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTG 553
Query 1163 TGTCAAGGCCAGCTCATTCCCGGGACTAAACCCTAATTCCATCTATTTCCTCGGTGAAGG 1222
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 554 TGTCAAGGCCAGCTCATTCCCAGGCCTAAACCCTAATTCCATCTATTTCCTCGGTGAAGG 613
Query 1223 CTA---------C---GGTGTTTATGATATCGCCACTAGATCCCCACGTTCCTTCACA-C 1269
||| | |||||||| ||||||||||||||| ||||||||||||||| | |
Sbjct 614 CTATGGTGAAGGCTATGGTGTTTACGATATCGCCACTAGAACCCCACGTTCCTTCA-ATC 672
Query 1270 CCAAGTCT 1277
||||||||
Sbjct 673 CCAAGTCT 680
Score = 86.1 bits (46), Expect = 7e-16
Identities = 59/65 (91%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 141 GCAAAGCTATGTCGTCTCTGCTTCTCAGATtctcttccaagtcc-tctctccacaaactt 199
|||||||||||||||||||||||||||| ||||||||| | || ||||||| |||||||
Sbjct 13 GCAAAGCTATGTCGTCTCTGCTTCTCAGCCTCTCTTCCAGG-CCATCTCTCCGCAAACTT 71
Query 200 gctct 204
|||||
Sbjct 72 GCTCT 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5