BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16080.1 Length=1455 Score E Sequences producing significant alignments: (Bits) Value Ahg935559 jgi|Araly1|935559|scaffold_403547.1 717 0.0 Ahg493278 jgi|Araly1|493278|fgenesh2_kg.7__2711__AT4G16080.1 640 0.0 Ahg935697 jgi|Araly1|935697|scaffold_403685.1 307 1e-82 > Ahg935559 jgi|Araly1|935559|scaffold_403547.1 Length=1099 Score = 717 bits (388), Expect = 0.0 Identities = 766/938 (82%), Gaps = 67/938 (7%) Strand=Plus/Plus Query 393 ACAGAGTTCCTCATGTTGGACCCGGCCAAAGAGGATTATTTCACC-ACCGTTGATAAGCC 451 |||||| ||| |||||| ||||||||||| || || ||||| ||| ||| ||||||||| Sbjct 69 ACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTTACCGTCCG-TGATAAGCC 127 Query 452 ACTTCCCAAAAATTTGATTAAGTCTAAGCTAGTGGGAAGTTCCCATGGATGGGGTGTTTA 511 |||| ||||| | ||| ||| ||| | ||| ||||||||||||||||| ||||| |||| Sbjct 128 ACTTACCAAAGAGTTGGTTACGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGAGTTTT 187 Query 512 TCTCAGCTCCCCTGATTACATACTAATCAGC-A--ACT---ATCCCTCGAGGTCTAAATC 565 ||| |||||||| ||| ||||||||| ||| | ||| |||| ||||| || ||||| Sbjct 188 TCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCATCGAGCTCCAAATC 247 Query 566 AAATCCCAAGATCATTGATCTGCCTCCTCGTCCTAG-TCT-AA-A-TGGTTCTCAAACTG 621 ||| |||||||| || |||||||||||| || | | || | | || ||||| || Sbjct 248 AAACCCCAAGATGATCCCTCTGCCTCCTCG---AAGTTATGAATACT-CTTGTCAAAATG 303 Query 622 AATTGGTAAGTGGTGTGGCAATGTCCTCTTCTCCTGAAGAGGAAGAATGCATTATTGCTG 681 ||||||||||||| |||||||||||||||||||||||||| ||||| | | |||| |||| Sbjct 304 AATTGGTAAGTGGCGTGGCAATGTCCTCTTCTCCTGAAGAAGAAGACTTCGTTATCGCTG 363 Query 682 TCAAATACATGGGACGTCCGGTGAGTATATATACGCCTGGTCAAGACAGTCAGGGGTTCC 741 |||| | || |||||||| |||||||||||||| ||| |||||| || || ||||| || Sbjct 364 TCAAGTTCACGGGACGTCGGGTGAGTATATATAGGCCCGGTCAACACCGTAAGGGGAACC 423 Query 742 TCCTTGC-TAT-GTCCACTAG-ATTATTCGATTATTTTGAGCAATCTAAGTTGATGTATT 798 || || | | ||| ||| | |||||||||||||||||| ||| | || |||||||||| Sbjct 424 ACC--GCTTTTCGTCTACT-GAATTATTCGATTATTTTGAACAAGCCAACTTGATGTATT 480 Query 799 CCAAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGG 858 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 CCAAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGAGGCCACCACTTGTGGTCTTGGA 540 Query 859 TTGGTCTCCCATCCACC-ACGCCTCAGTACCATGAGTTAAAG-TTTCATAACCTTCCTCA 916 |||| | ||||||| || | |||||||||||| ||| | ||||| |||||||||| Sbjct 541 ATGGTATAATATCCACCGACTC-TCAGTACCATGACTTAC-GCTTTCACAACCTTCCTCT 598 Query 917 GTTTTCGCATTCCGAGTTGCAGCTTTTC-GATTCTTGTTACAGGGCACA-CGAGCTTGTG 974 |||||| | |||||||||||||||||| ||| ||||||||||| |||| | | |||||| Sbjct 599 GTTTTCACTTTCCGAGTTGCAGCTTTTGAGAT-CTTGTTACAGGACACAACAA-CTTGTG 656 Query 975 GAGTCTCCTTCAGGACAACGTTTCTTACTCAAATGGTACGTTGAAAGCCCT-G-C-GAAC 1031 |||||||| |||||||| |||||| || |||||||||| ||| ||| |||| | | | | Sbjct 657 GAGTCTCCCTCAGGACAGCGTTTCCTAGTCAAATGGTATGTTCAAA-CCCTTGGCAGGTC 715 Query 1032 -----AA-G--T--CGT-TAG-T----A---TTCAATTGTGGCGGCACAAAGCGGTTCAT 1072 || | | || ||| | | |||| || |||||||||||||| ||||| Sbjct 716 TGTTCAAAGCCTTGCGCATAGGTCGGTAAAATTCAGTTTTGGCGGCACAAAGCTATTCAT 775 Query 1073 GGTGTTTAGAGAAGAGGAAGACATGAACATGTGTTACACAGAAGACATTGGTGATCTCTG 1132 |||||| ||||| |||||||| |||||| ||||||||||| ||||||||||||||||||| Sbjct 776 GGTGTTCAGAGAGGAGGAAGATATGAACTTGTGTTACACACAAGACATTGGTGATCTCTG 835 Query 1133 CATATTCCTCGGCAACAACGAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCGGGACTAAA 1192 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 836 CATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGCTCCTTCCCGGGCCTAAA 895 Query 1193 CCCTAATTCCATCTATTTCCTCGGTGA-----A-GG------CTACGGTGTTTATGATAT 1240 |||||||||||| |||||||||||||| | || ||| ||| |||| ||||| Sbjct 896 CCCTAATTCCATTTATTTCCTCGGTGACCGTTATGGTGAAGGCTATGGTATTTACGATAT 955 Query 1241 CGCCACTAGATCCCCACGTTCCTTCACA-CCCAAGTCT 1277 ||||||||| ||||||||||||||| | ||||||||| Sbjct 956 TGCCACTAGAACCCCACGTTCCTTCA-ATCCCAAGTCT 992 > Ahg493278 jgi|Araly1|493278|fgenesh2_kg.7__2711__AT4G16080.1 Length=1155 Score = 640 bits (346), Expect = 0.0 Identities = 533/614 (87%), Gaps = 49/614 (8%) Strand=Plus/Plus Query 34 TTCTTGTGGCCAGGCACTTTGGTCTTAGATCGAGTCAAGAAGGGACTTTC-TTGGTTGAC 92 |||||||||| | |||||||||||||||| | |||||||||||||| ||| || |||||| Sbjct 1 TTCTTGTGGCTAAGCACTTTGGTCTTAGACCAAGTCAAGAAGGGAC-TTCATT-GTTGAC 58 Query 93 TAACTCGAAAACCCTTTCTTTATTTCTTTTTGATTCTTCAC-TATCAACGCAAAGCTATG 151 |||||||||||||| | ||| ||||| |||||| ||||| |||||| ||||||||||| Sbjct 59 TAACTCGAAAACCC--T-TTT-GTTCTTGTTGATTTTTCACATATCAAAGCAAAGCTATG 114 Query 152 TCGTCTCTGCTTCTCAGATtctcttccaagtcctctctccacaaacttgctctcgtaaat 211 ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| Sbjct 115 TCGTCTCTGCTTCTCAGCTTCTCTTCCAAGTCCTCTCTCCGCAAACTTGCTCTGGTAAAT 174 Query 212 ctcttcaatctctctctgtttctagtttttatataatctctgttttattcttcctcttct 271 |||||||| || |||||||||| ||||||||||| | || |||||| Sbjct 175 CTCTTCAA------TC----TCTAGTTTTTGTATAATCTCTG------T-TT--TCTTCT 215 Query 272 tctaatgtctACTTCTTTACTCATCCCACAGAGATGT-AACACCTTTAGGATGTTCTCCT 330 || | | |||| | |||| |||||| || ||| || |||||||||||| Sbjct 216 TC-----T-T-CTTC--T--TCAT-------AGATGTCAA-ACCCTTCGGATGTTCTCCT 256 Query 331 CCTCAACCACCAACCCTTTTTTGCTGCATCATGCCATCCCTTGTGGTGAAGAAGCCCAAA 390 |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 257 CCTCTACCACCAACCCTTTTTTGCTGCATCGTGCCACCCCTTGTGGTGAAGAAGCCCAAA 316 Query 391 -GAACAGAGTTCCTCATGTTGGACCCGGCCAAAGAGGATTATTTCACCACCGTTGATAAG 449 | ||||||||||||||||| ||||||||||| || || |||||||||| || ||||||| Sbjct 317 TG-ACAGAGTTCCTCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCATCGCTGATAAG 375 Query 450 CCACTTCCCAAAAATTTGATTAAGTCTAAGCTAGTGGGAAGTTCCCATGGATGGGGTGTT 509 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 376 CCACTTCCCAAAGATTTGATTAAGTCTAATCTAGTGGGAAGTTCCCATGGATGGGGAGTT 435 Query 510 TATCTCAGCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGGTCTAAATCAAAT 569 ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 436 TATCTCATCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGCTCCAAATCAAAC 495 Query 570 CCCAAGATCATTGATCTGCCTCCTCGTCCTAGTCTAAATGGTTCTCAAACTGAATTGGTA 629 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 496 CCCAAGATCATTGATCTGCCTCCTCGGCCTAGTCTAAATGGTTCTCAAACGGAATTGGTA 555 Query 630 AGTGGTGTGGCAAT 643 |||||||||||||| Sbjct 556 AGTGGTGTGGCAAT 569 Score = 451 bits (244), Expect = 6e-126 Identities = 279/296 (94%), Gaps = 1/296 (0%) Strand=Plus/Plus Query 683 CAAATACATGGGACG-TCCGGTGAGTATATATACGCCTGGTCAAGACAGTCAGGGGTTCC 741 ||| ||||||||||| ||| |||||||||||||||||||||| || | | | ||||||| Sbjct 566 CAATTACATGGGACGTTCCTGTGAGTATATATACGCCTGGTCGTGAAACTAAAGGGTTCC 625 Query 742 TCCTTGCTATGTCCACTAGATTATTCGATTATTTTGAGCAATCTAAGTTGATGTATTCCA 801 |||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 626 TCCTGGCAATGTCTACTAGATTATTCGATTATTTTGAGCAATCCAAGTTGATGTATTCCA 685 Query 802 AGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 861 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 686 AGAGAGATCAAAGATTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 745 Query 862 GTCTCCCATCCACCACGCCTCAGTACCATGAGTTAAAGTTTCATAACCTTCCTCAGTTTT 921 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 746 GTCTCCCATCCACCACACCTCAGTACCATGAGTTAAAGTTTCAAAACCTTCCTCAGTTTT 805 Query 922 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGGCACACGAGCTTGTGGAG 977 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 806 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGACACACGAGCTTGTGGAG 861 Score = 324 bits (175), Expect = 1e-87 Identities = 236/263 (90%), Gaps = 13/263 (5%) Strand=Plus/Plus Query 1068 TTC-ATGGTGTTTAGAGAAGAGGAAGACATGAACATGTGTTACACAGAAGACATTGGTGA 1126 ||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 891 TTCAATTGTGTTTAGAGAAGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGA 950 Query 1127 TCTCTGCATATTCCTCGGCAACAACGAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCGGG 1186 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 951 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAAGCCAGCTCATTCCCGGG 1010 Query 1187 ACTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTA---------C---GGTGTTTA 1234 ||||| ||||| |||||||||||||||||||||||||| | |||||||| Sbjct 1011 CCTAAAACCTAACTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTACGGTGTTTA 1070 Query 1235 TGATATCGCCACTAGATCCCCACGTTCCTTCACACCCAAGTCTACACCAAGTTCCTCCTC 1294 ||||||||||||| | ||||||||||||||||||||||||||||||||| || || || Sbjct 1071 CGATATCGCCACTAAAACCCCACGTTCCTTCACACCCAAGTCTACACCAAATTGCTGTTC 1130 Query 1295 GGAACAAATAGTCCTCCCTTACT 1317 ||||||||||||||||||||||| Sbjct 1131 GGAACAAATAGTCCTCCCTTACT 1153 > Ahg935697 jgi|Araly1|935697|scaffold_403685.1 Length=796 Score = 307 bits (166), Expect = 1e-82 Identities = 223/248 (90%), Gaps = 14/248 (6%) Strand=Plus/Plus Query 1043 ATTCAATTGTGGCGGCACAAAGCGGTTCATGGTGTTTAGAGAAGAGGAAGACATGAACAT 1102 |||||||| ||| ||||||||| |||||||||||||||||| |||||||| |||||||| Sbjct 434 ATTCAATTTTGGGGGCACAAAGTTGTTCATGGTGTTTAGAGAGGAGGAAGATATGAACAT 493 Query 1103 GTGTTACACAGAAGACATTGGTGATCTCTGCATATTCCTCGGCAACAACGAGCCTTTTTG 1162 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 494 GTGTTACACAGAAGACATTGGTGATCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTG 553 Query 1163 TGTCAAGGCCAGCTCATTCCCGGGACTAAACCCTAATTCCATCTATTTCCTCGGTGAAGG 1222 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 554 TGTCAAGGCCAGCTCATTCCCAGGCCTAAACCCTAATTCCATCTATTTCCTCGGTGAAGG 613 Query 1223 CTA---------C---GGTGTTTATGATATCGCCACTAGATCCCCACGTTCCTTCACA-C 1269 ||| | |||||||| ||||||||||||||| ||||||||||||||| | | Sbjct 614 CTATGGTGAAGGCTATGGTGTTTACGATATCGCCACTAGAACCCCACGTTCCTTCA-ATC 672 Query 1270 CCAAGTCT 1277 |||||||| Sbjct 673 CCAAGTCT 680 Score = 86.1 bits (46), Expect = 7e-16 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 141 GCAAAGCTATGTCGTCTCTGCTTCTCAGATtctcttccaagtcc-tctctccacaaactt 199 |||||||||||||||||||||||||||| ||||||||| | || ||||||| ||||||| Sbjct 13 GCAAAGCTATGTCGTCTCTGCTTCTCAGCCTCTCTTCCAGG-CCATCTCTCCGCAAACTT 71 Query 200 gctct 204 ||||| Sbjct 72 GCTCT 76 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54430960105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5