BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16095.1

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493277 jgi|Araly1|493277|fgenesh2_kg.7__2710__AT4G16095.1         774    0.0  


> Ahg493277 jgi|Araly1|493277|fgenesh2_kg.7__2710__AT4G16095.1
Length=597

 Score =  774 bits (419),  Expect = 0.0
 Identities = 491/526 (93%), Gaps = 3/526 (1%)
 Strand=Plus/Plus

Query  40   GAGAGCAGTAGTGTGGAAGACCTTCTTGGTATGACTAAGCTCAGAACTCTCACGGTCCAT  99
            |||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  28   GAGAACAGTAGTGTGAAAGACCTTCTTGGTATGACTAAGCTCAGAACTCTCACTGTCCAT  87

Query  100  TCCCTTGATGGTTGTACGTTAGAAACTCTGTCTGCATCTCTCTGTGAATCGAGAGAACTC  159
            ||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||
Sbjct  88   TCCCTTGATGGTTGTACTTTAGAAACTCTGTCTGCATCTCTCCATGAATCGAGAGAACTC  147

Query  160  GGGCAGCTTTCATTGTACGAGGTCATGCATGATAGGCATAATGAAGGAAAATTAGTTCTT  219
            | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  148  GAGCATCTTTCATTGTACGAGGTCATGCATGGTAGGCATAATGAAGGAAAATTAGTTCTT  207

Query  220  GATTTGATTCAACTCAAATTTTTAACGGTGGGCATGCATATGCCTAGGTTGCCTGATCAA  279
            |||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  208  GATTCGATTCATCTCAAATTTTTAACGGTGGGCATGCATATGACTAGATTGCCTGATCAA  267

Query  280  CATCGATTCCCTCCAAACCTTACGAACATATGTCTTCGGTATTGTTGCATGGAAGATGAT  339
            ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct  268  CATCGATTCCCTCCAAACCTTGCGCACATATGTCTTCGGTATTGTTGCATGGAAGAGGAT  327

Query  340  CCAATGCCGATTCTAGAGAAGTTGCTCCACTTGAAATTGGTTGAATTATCATATGGTGCT  399
            |||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||
Sbjct  328  CCAATGCCGATTCTAGAGAAGTTGCTTCACTTGAAATTTGTTGAACTATCATATCGTGCT  387

Query  400  TTCACTGGGAAGAAGATGGAGCTTCCGGATGAGGTCATATACATAACATCCTTAAAACAA  459
            ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct  388  TTCACTGGGAAGAGGATGGAGCTTCCGGACGAGCTCATATACATAACATCCTTAAAAGAA  447

Query  460  CTGACAATTGGA-GGAAGGAATAGTGAATGGGTGTGGAAATTGTCTGAAAGAGGACAAGA  518
            || ||||||||  ||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  448  CTCACAATTGGGTGGAGGGA-TAGTGAATGGGGGTGGAAATTGTCTGAAAGAGGACAAGA  506

Query  519  TCACTACAAAGTTCACCACATTCCTTGTGTTCAGTTTATTTACTAG  564
            |||||| ||||| |||||||||||  ||||||| ||||||||||||
Sbjct  507  TCACTATAAAGTCCACCACATTCCC-GTGTTCATTTTATTTACTAG  551



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20604018060


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5