BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16110.1 Length=2666 Score E Sequences producing significant alignments: (Bits) Value Ahg946673 jgi|Araly1|946673|scaffold_702902.1 1766 0.0 Ahg479152 jgi|Araly1|479152|fgenesh2_kg.3__1853__AT3G16857.2 497 1e-139 > Ahg946673 jgi|Araly1|946673|scaffold_702902.1 Length=2073 Score = 1766 bits (956), Expect = 0.0 Identities = 1080/1139 (95%), Gaps = 11/1139 (1%) Strand=Plus/Plus Query 271 GTTCGTTTTCTGGACGAGAGAGATGGTAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 330 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 GTTCGTTTTCTGGACGAGAGAGATGATAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 60 Query 331 TACTGCTGCTGGTGGGTCAAACTCCGACCCGTTTCCTGCGAATCTTCGAGTTCTTGTCGT 390 |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 TACTGCTGGTGGTGGGTCGAACTCCGACCCGTTTCCGGCGAATCTTCGAGTTCTTGTCGT 120 Query 391 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTCTACAG 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTTTACAG 180 Query 451 AGTAACTAAATGTAACAGAGCAGAGAGCGCATTGTCTCTGCTTCGGAAGAACAAGAATGG 510 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 181 AGTAACTAAATGTAACAGAGCAGAGATCGCATTGTCTCTGCTTCGAAAGAACAAGAATGG 240 Query 511 TTTTGATATTGTCATTAGTGATGTTCATATGCCTGACATGGATGGTTTCAAGCTCCTTGA 570 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || Sbjct 241 TTTTGATATTGTCATCAGTGATGTTCATATGCCTGACATGGATGGCTTCAAGCTTCTCGA 300 Query 571 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 360 Query 631 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 420 Query 691 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGTAACGAGTGGAATGT 750 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 421 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGGAACGAGTGGAATGT 480 Query 751 TTCTGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGTGACAGGGACAGGCAGCAGCA 810 ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 481 TTCGGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGCGATAGGGACAGGCAGCAGCA 540 Query 811 GCATAGGGAGGATGCTGATAACAACTCGTCTTCAGTTAATGAAGGGAACGGGAGGAGCTC 870 ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 541 GCAGAGGGAGGATGCTGATAACAACTCGTCTTCGGTTAATGAAGGGAACTGGAGGAACTC 600 Query 871 GAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAAGACTCATCGAG 930 ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 601 AAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAGGACACTTCGAG 660 Query 931 TTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGT 990 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 661 TTTGAAGAAACCACGCGTGGTTTGGTCGGTTGAATTGCATCAGCAGTTTGTCGCTGCTGT 720 Query 991 GAATCAGCTAGGCGTTGACAAAGCTGTTCCTAAGAAGATCTTAGAGATGATGAATGTACC 1050 ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 721 GAATCAGCTCGGCGTTGACAAAGCGGTCCCTAAGAAGATCTTAGAGATGATGAATGTACC 780 Query 1051 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTGAGACG 1110 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 781 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTAAGACG 840 Query 1111 GCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 1170 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 841 GCTTGGAGGAGTATCGCAGCACCAGGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 900 Query 1171 TCAGAGTTTTGGACCTCTTTCTTCGTTGAATGGATTTGATCTTCAATCTTTAGCTGTTAC 1230 |||||||||||| ||||||||||||||||||||||||||||| | |||| || | Sbjct 901 TCAGAGTTTTGGTCCTCTTTCTTCGTTGAATGGATTTGATCT--AG-CTTTTGC-G---- 952 Query 1231 TGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTTGGCCGGCCTAC 1290 |||||||| ||| ||||||||||||||||| ||||||||||||| ||||| |||||||| Sbjct 953 -GGTCAGCTTCCTGCTCAGAGCCTTGCACAGTTTCAAGCAGCTGGCCTTGGTCGGCCTAC 1011 Query 1291 ACTCGCTAAACCAGGGATGTCGGTTTCTCCCCTTGTAGATCAGAGAAGCATCTTCAACTT 1350 |||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1012 ACTCACTAAACCGGGGATGTCAGTTTCTCCCCTTGTAGATCAGAGAACCATCTTCAACTT 1071 Query 1351 TGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTC-AGACGATGAACAATGGAAAT 1408 ||||||||| ||||||||||| |||||||||||||| | | |||||||||||||| ||| Sbjct 1072 TGAAAACCCGAAAATAAGATTCGGAGACGGACATGGACCA-ACGATGAACAATGGTAAT 1129 Score = 1086 bits (588), Expect = 0.0 Identities = 789/881 (90%), Gaps = 34/881 (4%) Strand=Plus/Plus Query 1435 TCACATGCGTCTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCAGTAGC 1494 |||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1215 TCAC-TG-GTGTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCTGTAGC 1272 Query 1495 AGACCAGCTACCTCGAGGAGGACCATCGATGCTACCATCCCTCGGGCAACAGCCGATATT 1554 |||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 1273 AGACCAGCTACCCCGAGGAGGGCCATCAATGCTACCATCCCTTGGGCAACAGCCGATATT 1332 Query 1555 GTCAAGCAGCGTTTCAAGAAGAAGCGATCTCACTGGTGCGCTGGCGGTTAGAAACAGTAT 1614 ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1333 ATCAAGCAGCGTTTCAAGGAGAAGCGATCTCACTGGTGCGGTGGCGGTTAGAAACAGTAT 1392 Query 1615 CCCCGAGACCAACAGCAGAGTGTTACCAACTACTCACTCGGTCTTCAATAACTTCCCCGC 1674 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1393 CCCCGAGACCAACAACAGAGTGTTACCAACTACCCACTCGGTCTTCAATAACTTCCCCTC 1452 Query 1675 GGATCTACCTCGCAGCAGCTTCCCGTTGGCAAGTGCCCCAGGGATTTCAGTTCCAGTATC 1734 | |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| || Sbjct 1453 GAATCTACCTCGCAACAGCTTCCCATTGAAAAGTGCCCCAGGGATTTCAGTTCCAGTGTC 1512 Query 1735 AGTTTCTTACCAAGAAGAGGTCAACAGCTCGGATGCAAAAGGAGGTTCATCAGCTGCTAC 1794 | |||||| ||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct 1513 GGCTTCTTATCAAGAAGAGGTCAACAGCTCGGACGCCAGAGGTGGTTCATCAGCTGCTAC 1572 Query 1795 TGCTG-----G-A---TTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCAGCA 1845 || | | | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1573 CGCGGCAACTGCAGGGTTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCATCA 1632 Query 1846 CCAACAGCACAACAAGAACATCAGCAATAAACTAAACGATTGGGATCTGCGGAATATGGG 1905 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1633 CCAACAGCACAACAACAACATCAGCAACAAACTGAACGATTGGGATCTGCGGAATATGGG 1692 Query 1906 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAACTGCAACCGCAACCGCAGCATTTTCCAC 1965 ||||||||||||||||||||||||||||||| ||||||| ||| || | |||||| | Sbjct 1693 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAGCTGCAACTGCA---GC-G--TTTTCCTC 1746 Query 1966 TTCGGAAGCATACTCTTCGTCTTCTACGCAGAGAAAAAGACGGGAAACGGACGCAACAGT 2025 |||| | || | | | | || |||||||||| |||||||| ||||||||||| Sbjct 1747 TTCG------T-CT-T-C--CA-C-AC--AGAGAAAAAGGCGGGAAACAGACGCAACAGT 1791 Query 2026 TGTGGGTGAGCATGGGCAGAACCTGCAGTCACCGAGCCGGAATCTGTATCATCTGAACCA 2085 |||| ||||||||| |||||| | ||| |||| ||||||||||| ||||||| ||||| Sbjct 1792 GGTGGCTGAGCATGGACAGAACATTCAGCCACCAAGCCGGAATCTAAATCATCTTAACCA 1851 Query 2086 CGTTTTTATGGACGGTGGTTCAGTCAGAGTGAAGTCAGAAAGAGTGGCGGAGACAGTGAC 2145 ||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 1852 CGTTTATATGGATGGTGGTTCAGTCAGAGTGAAGTCAGAGAGAGTGGCGGATACCGTGAC 1911 Query 2146 TTGTCCTCCAGCAAATACATTGTTTCACGAGCAGTATAATCAAGAAGATCTGATGAGCGC 2205 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 1912 TTGTCCTCCAGCAAATACATTGTTTCAAGAGCAGTATAATCAAGAAGACCTAATGAGCGC 1971 Query 2206 ATTTCTCAAACAGGAAGGCATCCCATCCGTAGATAACGAGTTCGAATTTGACGGATACTC 2265 ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 1972 ATTTCTCAAACAGGAAGGCATTCCATCGGTAGATAACGAGTTCGATTTTGACGGATACTC 2031 Query 2266 CATCGATAATAT-CCAGGTCTGACTACAGAAACTCAGACTA 2305 |||||||||||| || ||||||||||||||||||||||||| Sbjct 2032 CATCGATAATATTCC-GGTCTGACTACAGAAACTCAGACTA 2071 > Ahg479152 jgi|Araly1|479152|fgenesh2_kg.3__1853__AT3G16857.2 Length=2519 Score = 497 bits (269), Expect = 1e-139 Identities = 491/594 (83%), Gaps = 32/594 (5%) Strand=Plus/Plus Query 818 GAGGATGC--T-GATAACAACTCGTCTTCAGTTAATGAAGGG---AAC--G-GGAGGAGC 868 |||||||| | ||| | ||||| || || ||||| |||||| ||| | |||| ||| Sbjct 832 GAGGATGCGGTGGATGATAACTCTTCCTCGGTTAACGAAGGGAACAACTGGAGGAGCAGC 891 Query 869 TCGA-GGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAA-G--GAAGACT- 923 || | |||||||||| || ||||||| ||| || |||||||||||||| | ||||| | Sbjct 892 TC-ACGGAAGCGGAAAGACGAGGAAGGAGAAGAGCAAGGGGATGATAAGGACGAAGA-TG 949 Query 924 CATCGAGTTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTG 983 | |||| ||| |||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 950 CGTCGAATTTGAAGAAACCGCGTGTTGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTG 1009 Query 984 CTGCTGTGAATCAGCTAGGCGTTGACAAAG-CTGTTCCTAAGAAGATCTTAGAGATGATG 1042 ||||||| |||||||| |||| || || | ||||||||||||||||||||| ||||| Sbjct 1010 CTGCTGTTAATCAGCTTGGCG----CAGAGGCGGTTCCTAAGAAGATCTTAGAGCTGATG 1065 Query 1043 AATGTACCCGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATAT 1102 ||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||| Sbjct 1066 AATGTTCCTGGGCTAACCCGAGAAAACGTAGCCAGTCACCTCCAGAAATACCGGATATAT 1125 Query 1103 CTGAGACGGCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACT 1162 || ||||||||||| |||||||| || |||||||| ||| | ||| | ||||||||||| Sbjct 1126 CTAAGACGGCTTGGGGGAGTATCTCAGCACCAAGGCAATCTAAACAACTCGTTTATGACG 1185 Query 1163 GGTCAAGAT-CAGAGTTTTGGACCTCTTTCTTCGTTGAATGGATTTGATCTTCAATCTTT 1221 ||||||||| || || || ||||||||||| |||||||||| |||||||||||| | | Sbjct 1186 GGTCAAGATGCA-AGCTTCGGACCTCTTTCGACGTTGAATGGGTTTGATCTTCAAGCGCT 1244 Query 1222 AGCTGTTACTGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTT-G 1280 ||| || || |||||||| ||| ||||||||||||||||||||||||| |||||| || | Sbjct 1245 AGCCGTCACAGGTCAGCTACCTGCTCAGAGCCTTGCACAGCTTCAAGCTGCTGGT-TTAG 1303 Query 1281 GCCGGCCTAC-AC--TCGCTAAACCAGGGATGTCGGTTTC-TCCCCTTGTAGATC-AGAG 1335 |||||||| | | || |||| |||| || ||||||| ||| |||| || | |||| Sbjct 1304 GCCGGCCTGCGATGGTCTCTAAGTCAGGTTTGCCGGTTTCCTCCA-TTGTGGA-CGAGAG 1361 Query 1336 AAGCATCTTCAACTTTGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTCA 1389 ||||||||||| |||||| ||| | |||| |||||| ||||| || | |||||| Sbjct 1362 AAGCATCTTCAGCTTTGACAACACGAAAACAAGATTCGGAGAGGGGCTTGGTCA 1415 Score = 473 bits (256), Expect = 2e-132 Identities = 393/456 (86%), Gaps = 22/456 (5%) Strand=Plus/Plus Query 373 TCTTCGAGTTCTTGTCGTTGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCT 432 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 363 TCTTCGAGTTCTTGTCGTTGACGATGACCCAACTTGTCTCATGATCTTAGAGAGGATGCT 422 Query 433 TATGACTTGTCTCTACAG-AGTAACTAAATGTAACAGAGCAGAGA-GCGCATTGTCTCTG 490 || ||||||||| ||| | |||||| ||||| ||||||||||||| | |||||||||||| Sbjct 423 TAGGACTTGTCTTTAC-GAAGTAACGAAATGCAACAGAGCAGAGATG-GCATTGTCTCTG 480 Query 491 CTTCGGAAGAACAAGA-ATGGTTTTGATATTGTCATTAGTGATGTTCATATGCCTGACAT 549 || ||||||||||| | |||| ||||||||||| || ||||||||||||||||||||||| Sbjct 481 CTCCGGAAGAACAA-ACATGGATTTGATATTGTAATCAGTGATGTTCATATGCCTGACAT 539 Query 550 GGATGGTTTCAAGCTCCTTGAACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGAT 609 ||| || ||||||||||||||||| |||||| |||||||||| ||||||||||||||||| Sbjct 540 GGACGGCTTCAAGCTCCTTGAACATGTTGGTCTAGAGATGGACTTACCTGTTATCATGAT 599 Query 610 GTCTGCGGATGATTCGAAGAGCGTTGTGT-TGAAAGG-AGTGACTCACGGTGCAGTTGAT 667 ||||||||||||||||||||| ||||| | | ||||| |||||| |||||||| |||||| Sbjct 600 GTCTGCGGATGATTCGAAGAGTGTTGT-TCT-AAAGGGAGTGACGCACGGTGCGGTTGAT 657 Query 668 TACCTCATCAAACCGGTACGTATTGAGGCT-TTGAAGAATATATGGCAACATGTGGTGCG 726 ||||| ||||| ||||||||||| ||||| || ||||| |||||||| |||||||| || Sbjct 658 TACCTTATCAAGCCGGTACGTATGGAGGCACTT-AAGAACATATGGCAGCATGTGGTTCG 716 Query 727 GAAGAAGCGTAACGAGTGGAATGTTTCTGAACATTCTGGAGGAAGTATTGAAGATACTGG 786 ||||| | | | ||||||| || | ||||||||||| | | | ||||| || || || Sbjct 717 GAAGAGGAGGAGTGAGTGGAGCGTACCGGAACATTCTGG-G-A-GCATTGAGGAGACCGG 773 Query 787 CGGTGACAGGGACAGGCAGCAGCAGCATAG-GGAGG 821 || || | |||| |||||||| ||||| ||||| Sbjct 774 CGA-GA--G--ACAG-CAGCAGCAACATAGAGGAGG 803 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100558246800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5