BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16110.1
Length=2666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946673 jgi|Araly1|946673|scaffold_702902.1 1766 0.0
Ahg479152 jgi|Araly1|479152|fgenesh2_kg.3__1853__AT3G16857.2 497 1e-139
> Ahg946673 jgi|Araly1|946673|scaffold_702902.1
Length=2073
Score = 1766 bits (956), Expect = 0.0
Identities = 1080/1139 (95%), Gaps = 11/1139 (1%)
Strand=Plus/Plus
Query 271 GTTCGTTTTCTGGACGAGAGAGATGGTAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 330
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GTTCGTTTTCTGGACGAGAGAGATGATAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 60
Query 331 TACTGCTGCTGGTGGGTCAAACTCCGACCCGTTTCCTGCGAATCTTCGAGTTCTTGTCGT 390
|||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TACTGCTGGTGGTGGGTCGAACTCCGACCCGTTTCCGGCGAATCTTCGAGTTCTTGTCGT 120
Query 391 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTCTACAG 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTTTACAG 180
Query 451 AGTAACTAAATGTAACAGAGCAGAGAGCGCATTGTCTCTGCTTCGGAAGAACAAGAATGG 510
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 181 AGTAACTAAATGTAACAGAGCAGAGATCGCATTGTCTCTGCTTCGAAAGAACAAGAATGG 240
Query 511 TTTTGATATTGTCATTAGTGATGTTCATATGCCTGACATGGATGGTTTCAAGCTCCTTGA 570
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 241 TTTTGATATTGTCATCAGTGATGTTCATATGCCTGACATGGATGGCTTCAAGCTTCTCGA 300
Query 571 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 360
Query 631 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 420
Query 691 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGTAACGAGTGGAATGT 750
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGGAACGAGTGGAATGT 480
Query 751 TTCTGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGTGACAGGGACAGGCAGCAGCA 810
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 481 TTCGGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGCGATAGGGACAGGCAGCAGCA 540
Query 811 GCATAGGGAGGATGCTGATAACAACTCGTCTTCAGTTAATGAAGGGAACGGGAGGAGCTC 870
||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 541 GCAGAGGGAGGATGCTGATAACAACTCGTCTTCGGTTAATGAAGGGAACTGGAGGAACTC 600
Query 871 GAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAAGACTCATCGAG 930
||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 601 AAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAGGACACTTCGAG 660
Query 931 TTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGT 990
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 661 TTTGAAGAAACCACGCGTGGTTTGGTCGGTTGAATTGCATCAGCAGTTTGTCGCTGCTGT 720
Query 991 GAATCAGCTAGGCGTTGACAAAGCTGTTCCTAAGAAGATCTTAGAGATGATGAATGTACC 1050
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 721 GAATCAGCTCGGCGTTGACAAAGCGGTCCCTAAGAAGATCTTAGAGATGATGAATGTACC 780
Query 1051 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTGAGACG 1110
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTAAGACG 840
Query 1111 GCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 1170
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 841 GCTTGGAGGAGTATCGCAGCACCAGGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 900
Query 1171 TCAGAGTTTTGGACCTCTTTCTTCGTTGAATGGATTTGATCTTCAATCTTTAGCTGTTAC 1230
|||||||||||| ||||||||||||||||||||||||||||| | |||| || |
Sbjct 901 TCAGAGTTTTGGTCCTCTTTCTTCGTTGAATGGATTTGATCT--AG-CTTTTGC-G---- 952
Query 1231 TGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTTGGCCGGCCTAC 1290
|||||||| ||| ||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 953 -GGTCAGCTTCCTGCTCAGAGCCTTGCACAGTTTCAAGCAGCTGGCCTTGGTCGGCCTAC 1011
Query 1291 ACTCGCTAAACCAGGGATGTCGGTTTCTCCCCTTGTAGATCAGAGAAGCATCTTCAACTT 1350
|||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1012 ACTCACTAAACCGGGGATGTCAGTTTCTCCCCTTGTAGATCAGAGAACCATCTTCAACTT 1071
Query 1351 TGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTC-AGACGATGAACAATGGAAAT 1408
||||||||| ||||||||||| |||||||||||||| | | |||||||||||||| |||
Sbjct 1072 TGAAAACCCGAAAATAAGATTCGGAGACGGACATGGACCA-ACGATGAACAATGGTAAT 1129
Score = 1086 bits (588), Expect = 0.0
Identities = 789/881 (90%), Gaps = 34/881 (4%)
Strand=Plus/Plus
Query 1435 TCACATGCGTCTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCAGTAGC 1494
|||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1215 TCAC-TG-GTGTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCTGTAGC 1272
Query 1495 AGACCAGCTACCTCGAGGAGGACCATCGATGCTACCATCCCTCGGGCAACAGCCGATATT 1554
|||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1273 AGACCAGCTACCCCGAGGAGGGCCATCAATGCTACCATCCCTTGGGCAACAGCCGATATT 1332
Query 1555 GTCAAGCAGCGTTTCAAGAAGAAGCGATCTCACTGGTGCGCTGGCGGTTAGAAACAGTAT 1614
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1333 ATCAAGCAGCGTTTCAAGGAGAAGCGATCTCACTGGTGCGGTGGCGGTTAGAAACAGTAT 1392
Query 1615 CCCCGAGACCAACAGCAGAGTGTTACCAACTACTCACTCGGTCTTCAATAACTTCCCCGC 1674
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1393 CCCCGAGACCAACAACAGAGTGTTACCAACTACCCACTCGGTCTTCAATAACTTCCCCTC 1452
Query 1675 GGATCTACCTCGCAGCAGCTTCCCGTTGGCAAGTGCCCCAGGGATTTCAGTTCCAGTATC 1734
| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 1453 GAATCTACCTCGCAACAGCTTCCCATTGAAAAGTGCCCCAGGGATTTCAGTTCCAGTGTC 1512
Query 1735 AGTTTCTTACCAAGAAGAGGTCAACAGCTCGGATGCAAAAGGAGGTTCATCAGCTGCTAC 1794
| |||||| ||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct 1513 GGCTTCTTATCAAGAAGAGGTCAACAGCTCGGACGCCAGAGGTGGTTCATCAGCTGCTAC 1572
Query 1795 TGCTG-----G-A---TTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCAGCA 1845
|| | | | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1573 CGCGGCAACTGCAGGGTTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCATCA 1632
Query 1846 CCAACAGCACAACAAGAACATCAGCAATAAACTAAACGATTGGGATCTGCGGAATATGGG 1905
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1633 CCAACAGCACAACAACAACATCAGCAACAAACTGAACGATTGGGATCTGCGGAATATGGG 1692
Query 1906 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAACTGCAACCGCAACCGCAGCATTTTCCAC 1965
||||||||||||||||||||||||||||||| ||||||| ||| || | |||||| |
Sbjct 1693 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAGCTGCAACTGCA---GC-G--TTTTCCTC 1746
Query 1966 TTCGGAAGCATACTCTTCGTCTTCTACGCAGAGAAAAAGACGGGAAACGGACGCAACAGT 2025
|||| | || | | | | || |||||||||| |||||||| |||||||||||
Sbjct 1747 TTCG------T-CT-T-C--CA-C-AC--AGAGAAAAAGGCGGGAAACAGACGCAACAGT 1791
Query 2026 TGTGGGTGAGCATGGGCAGAACCTGCAGTCACCGAGCCGGAATCTGTATCATCTGAACCA 2085
|||| ||||||||| |||||| | ||| |||| ||||||||||| ||||||| |||||
Sbjct 1792 GGTGGCTGAGCATGGACAGAACATTCAGCCACCAAGCCGGAATCTAAATCATCTTAACCA 1851
Query 2086 CGTTTTTATGGACGGTGGTTCAGTCAGAGTGAAGTCAGAAAGAGTGGCGGAGACAGTGAC 2145
||||| |||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1852 CGTTTATATGGATGGTGGTTCAGTCAGAGTGAAGTCAGAGAGAGTGGCGGATACCGTGAC 1911
Query 2146 TTGTCCTCCAGCAAATACATTGTTTCACGAGCAGTATAATCAAGAAGATCTGATGAGCGC 2205
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1912 TTGTCCTCCAGCAAATACATTGTTTCAAGAGCAGTATAATCAAGAAGACCTAATGAGCGC 1971
Query 2206 ATTTCTCAAACAGGAAGGCATCCCATCCGTAGATAACGAGTTCGAATTTGACGGATACTC 2265
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1972 ATTTCTCAAACAGGAAGGCATTCCATCGGTAGATAACGAGTTCGATTTTGACGGATACTC 2031
Query 2266 CATCGATAATAT-CCAGGTCTGACTACAGAAACTCAGACTA 2305
|||||||||||| || |||||||||||||||||||||||||
Sbjct 2032 CATCGATAATATTCC-GGTCTGACTACAGAAACTCAGACTA 2071
> Ahg479152 jgi|Araly1|479152|fgenesh2_kg.3__1853__AT3G16857.2
Length=2519
Score = 497 bits (269), Expect = 1e-139
Identities = 491/594 (83%), Gaps = 32/594 (5%)
Strand=Plus/Plus
Query 818 GAGGATGC--T-GATAACAACTCGTCTTCAGTTAATGAAGGG---AAC--G-GGAGGAGC 868
|||||||| | ||| | ||||| || || ||||| |||||| ||| | |||| |||
Sbjct 832 GAGGATGCGGTGGATGATAACTCTTCCTCGGTTAACGAAGGGAACAACTGGAGGAGCAGC 891
Query 869 TCGA-GGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAA-G--GAAGACT- 923
|| | |||||||||| || ||||||| ||| || |||||||||||||| | ||||| |
Sbjct 892 TC-ACGGAAGCGGAAAGACGAGGAAGGAGAAGAGCAAGGGGATGATAAGGACGAAGA-TG 949
Query 924 CATCGAGTTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTG 983
| |||| ||| |||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 950 CGTCGAATTTGAAGAAACCGCGTGTTGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTG 1009
Query 984 CTGCTGTGAATCAGCTAGGCGTTGACAAAG-CTGTTCCTAAGAAGATCTTAGAGATGATG 1042
||||||| |||||||| |||| || || | ||||||||||||||||||||| |||||
Sbjct 1010 CTGCTGTTAATCAGCTTGGCG----CAGAGGCGGTTCCTAAGAAGATCTTAGAGCTGATG 1065
Query 1043 AATGTACCCGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATAT 1102
||||| || |||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1066 AATGTTCCTGGGCTAACCCGAGAAAACGTAGCCAGTCACCTCCAGAAATACCGGATATAT 1125
Query 1103 CTGAGACGGCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACT 1162
|| ||||||||||| |||||||| || |||||||| ||| | ||| | |||||||||||
Sbjct 1126 CTAAGACGGCTTGGGGGAGTATCTCAGCACCAAGGCAATCTAAACAACTCGTTTATGACG 1185
Query 1163 GGTCAAGAT-CAGAGTTTTGGACCTCTTTCTTCGTTGAATGGATTTGATCTTCAATCTTT 1221
||||||||| || || || ||||||||||| |||||||||| |||||||||||| | |
Sbjct 1186 GGTCAAGATGCA-AGCTTCGGACCTCTTTCGACGTTGAATGGGTTTGATCTTCAAGCGCT 1244
Query 1222 AGCTGTTACTGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTT-G 1280
||| || || |||||||| ||| ||||||||||||||||||||||||| |||||| || |
Sbjct 1245 AGCCGTCACAGGTCAGCTACCTGCTCAGAGCCTTGCACAGCTTCAAGCTGCTGGT-TTAG 1303
Query 1281 GCCGGCCTAC-AC--TCGCTAAACCAGGGATGTCGGTTTC-TCCCCTTGTAGATC-AGAG 1335
|||||||| | | || |||| |||| || ||||||| ||| |||| || | ||||
Sbjct 1304 GCCGGCCTGCGATGGTCTCTAAGTCAGGTTTGCCGGTTTCCTCCA-TTGTGGA-CGAGAG 1361
Query 1336 AAGCATCTTCAACTTTGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTCA 1389
||||||||||| |||||| ||| | |||| |||||| ||||| || | ||||||
Sbjct 1362 AAGCATCTTCAGCTTTGACAACACGAAAACAAGATTCGGAGAGGGGCTTGGTCA 1415
Score = 473 bits (256), Expect = 2e-132
Identities = 393/456 (86%), Gaps = 22/456 (5%)
Strand=Plus/Plus
Query 373 TCTTCGAGTTCTTGTCGTTGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCT 432
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 363 TCTTCGAGTTCTTGTCGTTGACGATGACCCAACTTGTCTCATGATCTTAGAGAGGATGCT 422
Query 433 TATGACTTGTCTCTACAG-AGTAACTAAATGTAACAGAGCAGAGA-GCGCATTGTCTCTG 490
|| ||||||||| ||| | |||||| ||||| ||||||||||||| | ||||||||||||
Sbjct 423 TAGGACTTGTCTTTAC-GAAGTAACGAAATGCAACAGAGCAGAGATG-GCATTGTCTCTG 480
Query 491 CTTCGGAAGAACAAGA-ATGGTTTTGATATTGTCATTAGTGATGTTCATATGCCTGACAT 549
|| ||||||||||| | |||| ||||||||||| || |||||||||||||||||||||||
Sbjct 481 CTCCGGAAGAACAA-ACATGGATTTGATATTGTAATCAGTGATGTTCATATGCCTGACAT 539
Query 550 GGATGGTTTCAAGCTCCTTGAACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGAT 609
||| || ||||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 540 GGACGGCTTCAAGCTCCTTGAACATGTTGGTCTAGAGATGGACTTACCTGTTATCATGAT 599
Query 610 GTCTGCGGATGATTCGAAGAGCGTTGTGT-TGAAAGG-AGTGACTCACGGTGCAGTTGAT 667
||||||||||||||||||||| ||||| | | ||||| |||||| |||||||| ||||||
Sbjct 600 GTCTGCGGATGATTCGAAGAGTGTTGT-TCT-AAAGGGAGTGACGCACGGTGCGGTTGAT 657
Query 668 TACCTCATCAAACCGGTACGTATTGAGGCT-TTGAAGAATATATGGCAACATGTGGTGCG 726
||||| ||||| ||||||||||| ||||| || ||||| |||||||| |||||||| ||
Sbjct 658 TACCTTATCAAGCCGGTACGTATGGAGGCACTT-AAGAACATATGGCAGCATGTGGTTCG 716
Query 727 GAAGAAGCGTAACGAGTGGAATGTTTCTGAACATTCTGGAGGAAGTATTGAAGATACTGG 786
||||| | | | ||||||| || | ||||||||||| | | | ||||| || || ||
Sbjct 717 GAAGAGGAGGAGTGAGTGGAGCGTACCGGAACATTCTGG-G-A-GCATTGAGGAGACCGG 773
Query 787 CGGTGACAGGGACAGGCAGCAGCAGCATAG-GGAGG 821
|| || | |||| |||||||| ||||| |||||
Sbjct 774 CGA-GA--G--ACAG-CAGCAGCAACATAGAGGAGG 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100558246800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5