BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16120.1 Length=2454 Score E Sequences producing significant alignments: (Bits) Value Ahg493274 jgi|Araly1|493274|fgenesh2_kg.7__2707__AT4G16120.1 3299 0.0 > Ahg493274 jgi|Araly1|493274|fgenesh2_kg.7__2707__AT4G16120.1 Length=2341 Score = 3299 bits (1786), Expect = 0.0 Identities = 2132/2294 (93%), Gaps = 43/2294 (2%) Strand=Plus/Plus Query 169 TTTAGGGTTCCATGGATTCAGCTCCCAACTTCATCCCTCGGTTACTTCTACTATCACTTC 228 ||||||||| ||||| || ||||||||||||||| |||| | |||||||||| ||||||| Sbjct 83 TTTAGGGTT-CATGGCTTTAGCTCCCAACTTCATTCCTCCGCTACTTCTACTCTCACTTC 141 Query 229 TCATCGTATCAATTCCTCTAACATCATCACAATCCGACGCCAACACTACTAATCCGTCAC 288 | |||||||||||||||||||| ||||| ||||||||||||||||||||||| | | Sbjct 142 TTATCGTATCAATTCCTCTAACGTCATCTCAATCCGACGCCAACACTACTAA----T--C 195 Query 289 CGTCACCACCGTCAGATTCGGATCTATGCAACGGTGTATTCGTTTCATACACTCACACTA 348 || ||||||||||||||||||||||||||||| |||||| | |||||||||||||| | Sbjct 196 CG---CCACCGTCAGATTCGGATCTATGCAACGGCGTATTCATATCATACACTCACACAA 252 Query 349 AAGGATCTAAGATCCCACCCAACGACACCGCAAATCAACCCTACCGGTTCGAATCTGTGA 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 AAGGATCTAAGATCCCACCCAACGACACCGCAAATCAACCCTACCGGTTCGAATCTGTGA 312 Query 409 TAACAGTGCTCAACCACGGCCGCGACGAGCTCAAATCATGGCGTGTCTTCGTCAAATTCG 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 313 TAACAGTGCTCAACCACGGCCGCGACGAGCTCAAATCATGGCGTGTCTTCGTCAAATTCG 372 Query 469 CACACCGAGAGATCCTCGTCTCTGCTTCAAACGCTGTACTCTCAGACGGCTCGAGCTTAC 528 | ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| Sbjct 373 CTCACCGAGAGATCCTCGTGTCTGCTTTAAATGCTGTACTCTCAGACGGCTCGAGCTTAC 432 Query 529 CGGTGAGCGTCGAAAACGGTACCGTTTTCGCTGGTTATCCTTCGTCGGATTTGAAATCAG 588 | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 433 CTGTGAGCGTCGAAAACGGCACCGTATTCGCTGGTTATCCTTCGTCGGATTTGAAATCGG 492 Query 589 CTATTCAGACTGCTGGTGATGTCACTCAGATGCAAGCTCGTGTTGAGCTCGTCGGGACTC 648 ||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 493 CTATTCAAACGGCGGGTGATGTCACTCAGATGCAAGCTCGTGTTGAGCTCGTTGGGACTC 552 Query 649 AGTTCGGAGTTGCGCCGCCGAATGTGCCGCTTCCTAAGAACATCACTCTCGCTACTGATG 708 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 553 AGTTCGGAGTTGCGCCGCCGAATGTTCCGCTTCCTAAGAACATCACTCTCGCTATTGATG 612 Query 709 GATGGAAATGTCCCAAAGCTACTCAAAAAGGTACAAATGTTCTGCAAGTATGTTGCATTC 768 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 613 GATGGAAATGTCCCAAAGCTACTCAAAAAGGTAAAAATGTTCTGCAAGTATGTTGCACGC 672 Query 769 CTGACCCAGACTATGATAACAGAGAGATCATTGATAATGAGTTTCTTCCACGAAAAGATG 828 ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||| Sbjct 673 CTGACCCAGACTATGATAACACAGAGATCATTGATAATGAGTTCCTTCCTCGACAAGATG 732 Query 829 GAGACCTCACTATCATGTACGATGTGGTCAGATCATATTCATCCAATTATATGGCACAGG 888 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 733 GAGACCTTACTATCATGTACGATGTGGTCAGATCATATTCATCGAATTATATGGCACAAG 792 Query 889 TCACTATGGAGAACCATAACCCGCTTGGCCGGCTGGATAACTGGAAACTGAGTTTTGACT 948 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 793 TCACGATGGAGAACCATAACCCGCTTGGCCGGCTGGATAACTGGAAACTGAGTTTTGACT 852 Query 949 GGATGCGGGACGAGTTTATCTACACCATGAAAGGGGCTTACCCGAGTATTGTTGATTCAT 1008 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 853 GGATGCGGGACGAGTTTATCTACACCATGAAAGGAGCTTACCCGAGTATTGTTGATTCAT 912 Query 1009 CAGATTGTGTTGATGGCCCACAGGCGAAGCACTATCAAGATCTTGACTTCTCTAACGTGT 1068 ||||||||||||||||||||||||||||| ||| ||||||||||||||| || || |||| Sbjct 913 CAGATTGTGTTGATGGCCCACAGGCGAAGTACTTTCAAGATCTTGACTTTTCGAATGTGT 972 Query 1069 TAAGCTGTGCAAGACGGCCAACCGTCATAGATCTCCCTCCTACGAAATACAATGATTCGA 1128 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 973 TAAGCTGTGCAAGACGGCCAACCATCATAGATCTCCCTCCTACGAAATACAATGATTCAA 1032 Query 1129 CATTCGGTCTTATCCCATTTTGCTGCAGAAATGGGACGATTCTACCACGGTCAATGGATC 1188 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1033 CGTTCGGTCTTATCCCATTTTGCTGCAGAAATGGGACGATTCTACCGCGGTCAATGGATC 1092 Query 1189 CTAGCAAGTCGAGCTCAGTTTTCCAGATGCAGGTGTACAAAATGCCTCCTGATCTCAATA 1248 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1093 CTAGCAAGTCGAGCTCAGTTTTCCAGATGCAGGTGTACAAAATGCCTCCGGATCTCAATA 1152 Query 1249 TCTCTGCTCTATCACCGCCTCAGAACTGGAGAATAAACGGTACACTGAACCCGGATTACA 1308 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1153 TATCTGCTCTATCACCGCCTCAGAACTGGAGAATCAACGGTACACTGAACCCGGATTACA 1212 Query 1309 AGTGTGGCCCTCCTGTTCGGGTGAGCCCGAGCCAGTTCGTCGATCCCAGTGGATTACCTT 1368 |||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| | Sbjct 1213 AGTGTGGCCCTCCTGTTCGGGTGAGCCCGAGCCAATTCGCCGATCCCAGTGGGTTACCCT 1272 Query 1369 CAAACCGGACTGCTTTTGCAAGCTGGCAGGTGGTCTGCAACATCACCCAACCAAAAGATG 1428 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1273 CAAACAGGACTGCTTTTGCGAGCTGGCAGGTGGTCTGCAACATCACCCAACCAAAAGATG 1332 Query 1429 CGAGTCCTAGATGTTGTGTATCGTTCTCTGCCTACTTCAACGACTCAATCGTCCCATGCA 1488 | ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1333 CTAGTCCTAGATGCTGTGTATCGTTCTCTGCCTACTTCAACGACTCGATCGTCCCGTGCA 1392 Query 1489 AGACATGTGCTTGCGGGTGTTCCAGCAACAAAGCAGCCCGCGCTTGCAGTGCCACAGCTC 1548 |||| || |||||||| |||||||||||||||||||| ||||||||||| | ||||| | Sbjct 1393 AGACTTGCGCTTGCGGTTGTTCCAGCAACAAAGCAGCTCGCGCTTGCAGCACTACAGCCC 1452 Query 1549 CGTCTCTTCTTCTACCGCAGCAAGCTCTTCTGGTTCCATTTGAGAACCGAACTGAACTCA 1608 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1453 CGTCTCTTCTTCTACCCCAGCAAGCTCTTCTGGTTCCATTTGAGAACCGAACTGAACTCA 1512 Query 1609 CCGTCGCTTGGGCTTATCTAAAACAACGGCCCGTGCCAAACCCGATGCCTTGTGGGGATA 1668 | | ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 1513 CTGGCGCTTGGGCTTATCTAAAACATCGGCCGGTGCCAAACCCAATGCCTTGTGGGGATA 1572 Query 1669 ACTGCGGAGTTAGCATCAACTGGCATTTGGCTACAGATTATCGAGGTGGATGGACAGCCC 1728 ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1573 ACTGCGGGGTTAGCATCAATTGGCATTTGGCTACAGATTATCGAGGCGGATGGACAGCCC 1632 Query 1729 GGGTCACAGTCTTCAACTGGGGAGAAACAGACTTTGTAGATTGGTTTACCGCGGTTCAGA 1788 |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 1633 GGGTCACAGTCTTCAACTGGGGCGAAACAGATTTTGTAGATTGGTTTACCGCAATTCAGA 1692 Query 1789 TGAAAAATGCTGCACCGGGTTTCGAGAAAGCCTACTCATTCAATGCATCTACAATTGGTA 1848 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1693 TGAAAAACGCTGCCCCGGGTTTCGAGAAAGCCTACTCATTCAATGCATCTACACTTGGTA 1752 Query 1849 TCAACGGGAAGAACAATACTATTTTCATGGAGGGCCTTCCTGGATTGAATTATCTCGTCG 1908 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1753 TCAACGGGGAGAACAATACTATTTTCATGGAGGGCCTTCCCGGATTGAATTATCTCGTAG 1812 Query 1909 CAGAAAGAGACGGGGAAAATCCATTGAAGAATCCTCGGATTCCAGGAAAACAACAATCTG 1968 | |||||||||||||| ||||| |||||||||||||||||||| || |||||||| |||| Sbjct 1813 CGGAAAGAGACGGGGAGAATCCGTTGAAGAATCCTCGGATTCCCGGGAAACAACAGTCTG 1872 Query 1969 TTATGTCCTTTACTAAGAAACTGACTCCTGGAATCAATGTCCCTGGTGGAGATGGCTTCC 2028 |||| ||||| || ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1873 TTATTTCCTTCACCAAGAAACTGACTCCTGGGATTAATGTCCCTGGTGGAGATGGCTTCC 1932 Query 2029 CGAGCAAAGTGTTCTTCAACGGTGAGGAGTGCTCTCTCCCAACCATACTCCCAATGAGAA 2088 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1933 CGAGCAAAGTGTTCTTCAACGGTGAGGAGTGCTCTCTCCCAACCATACTCCCAGTGAGAA 1992 Query 2089 GTAGCCAACACCGGAAACACATCTCTGTTTTCCTCCTGGCATTACCTGTTTTGGCTCTCT 2148 | ||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||| Sbjct 1993 GCAGCCAACACCGGAGACACATCTCTGCTTTCCTCCTTGCATTACCTGTGTTGGCTCTCT 2052 Query 2149 TGATTCTGCGGGCGTAACTACACTGAAGCCTCCCGTTGGGTTGGCGATACAGTTTCTTGA 2208 ||||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 2053 TGATTTTGCGGGTGTAACTACACTGAAACCTCCTGTTGGGTTGGCGATACAGTTTCTTGA 2112 Query 2209 TTCTTCCCCGGCTTACTCGAGAACGGGTCCAATCCGCAGTTTATGGATGGAGAATCACTC 2268 |||||||| | | || ||| | | | ||||||||||||||| || Sbjct 2113 TTCTTCCC----T--C-CG----CGG-T----T------T--ATGGATGGAGAATCAATC 2148 Query 2269 GATTCTTTTTCAACCTG--ATGAGTGTTGGAACAAGCTTTATATAGGTGCTATGAAGATA 2326 ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| Sbjct 2149 GATTCTTTTTCAACCTGTGATAAGTGTTGGAAGAAGCTTTATATAGGTGCTATGAAGATA 2208 Query 2327 T----GTTACCATTCTTGTATTGTTTATGATTAGAGAATGTCAGTAATCACTAATCAGTA 2382 | |||||||||||||||||||||| |||||||| | |||||||||||||||||||| Sbjct 2209 TATATGTTACCATTCTTGTATTGTTTAAGATTAGAGTTTTTCAGTAATCACTAATCAGTA 2268 Query 2383 TGTATTACTATATTTTGTTTACTCATTCTCCGCCATTGGTTTGTTCCTAATCCTC-C-AA 2440 ||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| | || Sbjct 2269 TGTAT-ACTATATTTTGTTTACTCTTTCTCGGCCATTGATTTGTTCCTAATCCTCTCCAA 2327 Query 2441 ACCGGTATTCATAT 2454 |||||||||||||| Sbjct 2328 ACCGGTATTCATAT 2341 Score = 110 bits (59), Expect = 7e-23 Identities = 66/69 (96%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 33 TTTTCATTACAGCTTGCACTATCGCGGTCGCTTTATCAGTCATCATCTCTTCAAAA-GCT 91 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 1 TTTTCATTACAGCTTGCACTAACCCGGTCGCTTTATCAGTCATCATCTCTTCAAAAAGCT 60 Query 92 TCCATTTTT 100 ||||||||| Sbjct 61 TCCATTTTT 69 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92483114860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5