BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16120.1
Length=2454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493274 jgi|Araly1|493274|fgenesh2_kg.7__2707__AT4G16120.1 3299 0.0
> Ahg493274 jgi|Araly1|493274|fgenesh2_kg.7__2707__AT4G16120.1
Length=2341
Score = 3299 bits (1786), Expect = 0.0
Identities = 2132/2294 (93%), Gaps = 43/2294 (2%)
Strand=Plus/Plus
Query 169 TTTAGGGTTCCATGGATTCAGCTCCCAACTTCATCCCTCGGTTACTTCTACTATCACTTC 228
||||||||| ||||| || ||||||||||||||| |||| | |||||||||| |||||||
Sbjct 83 TTTAGGGTT-CATGGCTTTAGCTCCCAACTTCATTCCTCCGCTACTTCTACTCTCACTTC 141
Query 229 TCATCGTATCAATTCCTCTAACATCATCACAATCCGACGCCAACACTACTAATCCGTCAC 288
| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | |
Sbjct 142 TTATCGTATCAATTCCTCTAACGTCATCTCAATCCGACGCCAACACTACTAA----T--C 195
Query 289 CGTCACCACCGTCAGATTCGGATCTATGCAACGGTGTATTCGTTTCATACACTCACACTA 348
|| ||||||||||||||||||||||||||||| |||||| | |||||||||||||| |
Sbjct 196 CG---CCACCGTCAGATTCGGATCTATGCAACGGCGTATTCATATCATACACTCACACAA 252
Query 349 AAGGATCTAAGATCCCACCCAACGACACCGCAAATCAACCCTACCGGTTCGAATCTGTGA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 AAGGATCTAAGATCCCACCCAACGACACCGCAAATCAACCCTACCGGTTCGAATCTGTGA 312
Query 409 TAACAGTGCTCAACCACGGCCGCGACGAGCTCAAATCATGGCGTGTCTTCGTCAAATTCG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TAACAGTGCTCAACCACGGCCGCGACGAGCTCAAATCATGGCGTGTCTTCGTCAAATTCG 372
Query 469 CACACCGAGAGATCCTCGTCTCTGCTTCAAACGCTGTACTCTCAGACGGCTCGAGCTTAC 528
| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 373 CTCACCGAGAGATCCTCGTGTCTGCTTTAAATGCTGTACTCTCAGACGGCTCGAGCTTAC 432
Query 529 CGGTGAGCGTCGAAAACGGTACCGTTTTCGCTGGTTATCCTTCGTCGGATTTGAAATCAG 588
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 433 CTGTGAGCGTCGAAAACGGCACCGTATTCGCTGGTTATCCTTCGTCGGATTTGAAATCGG 492
Query 589 CTATTCAGACTGCTGGTGATGTCACTCAGATGCAAGCTCGTGTTGAGCTCGTCGGGACTC 648
||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 493 CTATTCAAACGGCGGGTGATGTCACTCAGATGCAAGCTCGTGTTGAGCTCGTTGGGACTC 552
Query 649 AGTTCGGAGTTGCGCCGCCGAATGTGCCGCTTCCTAAGAACATCACTCTCGCTACTGATG 708
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 553 AGTTCGGAGTTGCGCCGCCGAATGTTCCGCTTCCTAAGAACATCACTCTCGCTATTGATG 612
Query 709 GATGGAAATGTCCCAAAGCTACTCAAAAAGGTACAAATGTTCTGCAAGTATGTTGCATTC 768
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 613 GATGGAAATGTCCCAAAGCTACTCAAAAAGGTAAAAATGTTCTGCAAGTATGTTGCACGC 672
Query 769 CTGACCCAGACTATGATAACAGAGAGATCATTGATAATGAGTTTCTTCCACGAAAAGATG 828
||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||
Sbjct 673 CTGACCCAGACTATGATAACACAGAGATCATTGATAATGAGTTCCTTCCTCGACAAGATG 732
Query 829 GAGACCTCACTATCATGTACGATGTGGTCAGATCATATTCATCCAATTATATGGCACAGG 888
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 733 GAGACCTTACTATCATGTACGATGTGGTCAGATCATATTCATCGAATTATATGGCACAAG 792
Query 889 TCACTATGGAGAACCATAACCCGCTTGGCCGGCTGGATAACTGGAAACTGAGTTTTGACT 948
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TCACGATGGAGAACCATAACCCGCTTGGCCGGCTGGATAACTGGAAACTGAGTTTTGACT 852
Query 949 GGATGCGGGACGAGTTTATCTACACCATGAAAGGGGCTTACCCGAGTATTGTTGATTCAT 1008
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 853 GGATGCGGGACGAGTTTATCTACACCATGAAAGGAGCTTACCCGAGTATTGTTGATTCAT 912
Query 1009 CAGATTGTGTTGATGGCCCACAGGCGAAGCACTATCAAGATCTTGACTTCTCTAACGTGT 1068
||||||||||||||||||||||||||||| ||| ||||||||||||||| || || ||||
Sbjct 913 CAGATTGTGTTGATGGCCCACAGGCGAAGTACTTTCAAGATCTTGACTTTTCGAATGTGT 972
Query 1069 TAAGCTGTGCAAGACGGCCAACCGTCATAGATCTCCCTCCTACGAAATACAATGATTCGA 1128
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 973 TAAGCTGTGCAAGACGGCCAACCATCATAGATCTCCCTCCTACGAAATACAATGATTCAA 1032
Query 1129 CATTCGGTCTTATCCCATTTTGCTGCAGAAATGGGACGATTCTACCACGGTCAATGGATC 1188
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1033 CGTTCGGTCTTATCCCATTTTGCTGCAGAAATGGGACGATTCTACCGCGGTCAATGGATC 1092
Query 1189 CTAGCAAGTCGAGCTCAGTTTTCCAGATGCAGGTGTACAAAATGCCTCCTGATCTCAATA 1248
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1093 CTAGCAAGTCGAGCTCAGTTTTCCAGATGCAGGTGTACAAAATGCCTCCGGATCTCAATA 1152
Query 1249 TCTCTGCTCTATCACCGCCTCAGAACTGGAGAATAAACGGTACACTGAACCCGGATTACA 1308
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1153 TATCTGCTCTATCACCGCCTCAGAACTGGAGAATCAACGGTACACTGAACCCGGATTACA 1212
Query 1309 AGTGTGGCCCTCCTGTTCGGGTGAGCCCGAGCCAGTTCGTCGATCCCAGTGGATTACCTT 1368
|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |
Sbjct 1213 AGTGTGGCCCTCCTGTTCGGGTGAGCCCGAGCCAATTCGCCGATCCCAGTGGGTTACCCT 1272
Query 1369 CAAACCGGACTGCTTTTGCAAGCTGGCAGGTGGTCTGCAACATCACCCAACCAAAAGATG 1428
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 CAAACAGGACTGCTTTTGCGAGCTGGCAGGTGGTCTGCAACATCACCCAACCAAAAGATG 1332
Query 1429 CGAGTCCTAGATGTTGTGTATCGTTCTCTGCCTACTTCAACGACTCAATCGTCCCATGCA 1488
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1333 CTAGTCCTAGATGCTGTGTATCGTTCTCTGCCTACTTCAACGACTCGATCGTCCCGTGCA 1392
Query 1489 AGACATGTGCTTGCGGGTGTTCCAGCAACAAAGCAGCCCGCGCTTGCAGTGCCACAGCTC 1548
|||| || |||||||| |||||||||||||||||||| ||||||||||| | ||||| |
Sbjct 1393 AGACTTGCGCTTGCGGTTGTTCCAGCAACAAAGCAGCTCGCGCTTGCAGCACTACAGCCC 1452
Query 1549 CGTCTCTTCTTCTACCGCAGCAAGCTCTTCTGGTTCCATTTGAGAACCGAACTGAACTCA 1608
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CGTCTCTTCTTCTACCCCAGCAAGCTCTTCTGGTTCCATTTGAGAACCGAACTGAACTCA 1512
Query 1609 CCGTCGCTTGGGCTTATCTAAAACAACGGCCCGTGCCAAACCCGATGCCTTGTGGGGATA 1668
| | ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1513 CTGGCGCTTGGGCTTATCTAAAACATCGGCCGGTGCCAAACCCAATGCCTTGTGGGGATA 1572
Query 1669 ACTGCGGAGTTAGCATCAACTGGCATTTGGCTACAGATTATCGAGGTGGATGGACAGCCC 1728
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1573 ACTGCGGGGTTAGCATCAATTGGCATTTGGCTACAGATTATCGAGGCGGATGGACAGCCC 1632
Query 1729 GGGTCACAGTCTTCAACTGGGGAGAAACAGACTTTGTAGATTGGTTTACCGCGGTTCAGA 1788
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1633 GGGTCACAGTCTTCAACTGGGGCGAAACAGATTTTGTAGATTGGTTTACCGCAATTCAGA 1692
Query 1789 TGAAAAATGCTGCACCGGGTTTCGAGAAAGCCTACTCATTCAATGCATCTACAATTGGTA 1848
||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1693 TGAAAAACGCTGCCCCGGGTTTCGAGAAAGCCTACTCATTCAATGCATCTACACTTGGTA 1752
Query 1849 TCAACGGGAAGAACAATACTATTTTCATGGAGGGCCTTCCTGGATTGAATTATCTCGTCG 1908
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1753 TCAACGGGGAGAACAATACTATTTTCATGGAGGGCCTTCCCGGATTGAATTATCTCGTAG 1812
Query 1909 CAGAAAGAGACGGGGAAAATCCATTGAAGAATCCTCGGATTCCAGGAAAACAACAATCTG 1968
| |||||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||
Sbjct 1813 CGGAAAGAGACGGGGAGAATCCGTTGAAGAATCCTCGGATTCCCGGGAAACAACAGTCTG 1872
Query 1969 TTATGTCCTTTACTAAGAAACTGACTCCTGGAATCAATGTCCCTGGTGGAGATGGCTTCC 2028
|||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1873 TTATTTCCTTCACCAAGAAACTGACTCCTGGGATTAATGTCCCTGGTGGAGATGGCTTCC 1932
Query 2029 CGAGCAAAGTGTTCTTCAACGGTGAGGAGTGCTCTCTCCCAACCATACTCCCAATGAGAA 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1933 CGAGCAAAGTGTTCTTCAACGGTGAGGAGTGCTCTCTCCCAACCATACTCCCAGTGAGAA 1992
Query 2089 GTAGCCAACACCGGAAACACATCTCTGTTTTCCTCCTGGCATTACCTGTTTTGGCTCTCT 2148
| ||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 1993 GCAGCCAACACCGGAGACACATCTCTGCTTTCCTCCTTGCATTACCTGTGTTGGCTCTCT 2052
Query 2149 TGATTCTGCGGGCGTAACTACACTGAAGCCTCCCGTTGGGTTGGCGATACAGTTTCTTGA 2208
||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2053 TGATTTTGCGGGTGTAACTACACTGAAACCTCCTGTTGGGTTGGCGATACAGTTTCTTGA 2112
Query 2209 TTCTTCCCCGGCTTACTCGAGAACGGGTCCAATCCGCAGTTTATGGATGGAGAATCACTC 2268
|||||||| | | || ||| | | | ||||||||||||||| ||
Sbjct 2113 TTCTTCCC----T--C-CG----CGG-T----T------T--ATGGATGGAGAATCAATC 2148
Query 2269 GATTCTTTTTCAACCTG--ATGAGTGTTGGAACAAGCTTTATATAGGTGCTATGAAGATA 2326
||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 2149 GATTCTTTTTCAACCTGTGATAAGTGTTGGAAGAAGCTTTATATAGGTGCTATGAAGATA 2208
Query 2327 T----GTTACCATTCTTGTATTGTTTATGATTAGAGAATGTCAGTAATCACTAATCAGTA 2382
| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 2209 TATATGTTACCATTCTTGTATTGTTTAAGATTAGAGTTTTTCAGTAATCACTAATCAGTA 2268
Query 2383 TGTATTACTATATTTTGTTTACTCATTCTCCGCCATTGGTTTGTTCCTAATCCTC-C-AA 2440
||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| | ||
Sbjct 2269 TGTAT-ACTATATTTTGTTTACTCTTTCTCGGCCATTGATTTGTTCCTAATCCTCTCCAA 2327
Query 2441 ACCGGTATTCATAT 2454
||||||||||||||
Sbjct 2328 ACCGGTATTCATAT 2341
Score = 110 bits (59), Expect = 7e-23
Identities = 66/69 (96%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 33 TTTTCATTACAGCTTGCACTATCGCGGTCGCTTTATCAGTCATCATCTCTTCAAAA-GCT 91
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1 TTTTCATTACAGCTTGCACTAACCCGGTCGCTTTATCAGTCATCATCTCTTCAAAAAGCT 60
Query 92 TCCATTTTT 100
|||||||||
Sbjct 61 TCCATTTTT 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92483114860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5