BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16141.1

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329901 jgi|Araly1|329901|fgenesh1_pm.C_scaffold_7002128           468    4e-131


> Ahg329901 jgi|Araly1|329901|fgenesh1_pm.C_scaffold_7002128
Length=531

 Score =  468 bits (253),  Expect = 4e-131
 Identities = 307/334 (92%), Gaps = 0/334 (0%)
 Strand=Plus/Plus

Query  183  ATGTCAATGACGGAAGAAACCAAGACGACGAAGCTCGAATCGGCGGGAGATTCGTCCGAT  242
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCAATGACGGAAGAGACTAAGACGACGAAGCTCGAATCGGCGGGAGATTCGTCCGAT  60

Query  243  GTAGACAACGGGAACTGTAGTAGCAGTGGAAGTGGAGGTGATACGAAGAAGACATGCGTT  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTAGACAACGGGAACTGTAGTAGCAGTGGAAGTGGAGGTGATACGAAGAAGACATGCGTT  120

Query  303  GATTGCGGAACAAGCAGGACTCCTCTTTGGCGTGGTGGACCTGCTGGCCCTAAATCATTG  362
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  GATTGTGGAACAAGCAGGACTCCTCTTTGGCGTGGTGGACCTGCTGGACCTAAATCATTG  180

Query  363  TGCAATGCGTGTGGTATCAAGAGCAGAAAGAAGAGACAAGCAGCTCTTGGAATTAGACAA  422
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TGCAATGCGTGTGGGATCAAGAGCAGAAAGAAGAGACAAGCAGCTCTTGGAATTAGACAA  240

Query  423  GATGATATTAAAATCAAGAGCAAAAGTAATAACAATCTTGGTCTTGAGAGCCGAAATGTC  482
            ||||||| |||  |||||| ||||||||| ||||||||   | |||| |  |||| ||||
Sbjct  241  GATGATAATAAGCTCAAGAACAAAAGTAACAACAATCTCAATTTTGAAAATCGAACTGTC  300

Query  483  AAGACCGGAAAAGGCGAACCAGTTAATGTTAAGA  516
            ||||  |  ||||| |||| ||  ||||| ||||
Sbjct  301  AAGATTGCTAAAGGTGAACAAGGAAATGTCAAGA  334


 Score =  361 bits (195),  Expect = 7e-99
 Identities = 227/242 (94%), Gaps = 3/242 (1%)
 Strand=Plus/Plus

Query  535  GAATTGTCAAGATTGCCAAAGGTGAACCAGGAAATGTCAAGAACAAAATCAAGAGAGATC  594
            ||| |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||
Sbjct  293  GAACTGTCAAGATTGCTAAAGGTGAACAAGGAAATGTCAAGAACAAGATCAAGACAGATC  352

Query  595  CTGAGAATTCCAGTAGCAGCAATAATAACAAGAAGAACGTGAAAAGGGTTGGTAGATTTT  654
             |||||||| ||||||||| |||||||||   ||||| ||||||||||||||||||||||
Sbjct  353  ATGAGAATTTCAGTAGCAGTAATAATAAC---AAGAATGTGAAAAGGGTTGGTAGATTTT  409

Query  655  TGGATTTTGGGTTTAAGGTACCGGCGATGAAGAGATCGGCTGTGGAGAAGAAGAGGCTAT  714
            |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct  410  TGGATTTTGGGTTTAAAGTTCCGGCGATGAAGAGATCGGCGGTGGAGAAGAAGAGGCTAT  469

Query  715  GGAGGAAACTTGGGGAAGAGGAACGAGCCGCAGTACTTCTCATGGCTCTTTCTTGTGGTT  774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  470  GGAGGAAACTTGGGGAAGAGGAACGAGCCGCAGTACTTCTCATGGCTCTTTCTTGTGGTT  529

Query  775  GA  776
            ||
Sbjct  530  GA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37093598241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5