BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16144.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493270 jgi|Araly1|493270|fgenesh2_kg.7__2703__AT4G16144.1 2551 0.0
> Ahg493270 jgi|Araly1|493270|fgenesh2_kg.7__2703__AT4G16144.1
Length=1682
Score = 2551 bits (1381), Expect = 0.0
Identities = 1523/1592 (96%), Gaps = 8/1592 (1%)
Strand=Plus/Plus
Query 126 AAATTGTA-TAATCAGATACGGTGAGATGAAGATTGATCTGAACAAGGTGGCTCGTGAAA 184
|||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 48 AAATTG-ATTAATCGGATACGGCGAGATGAAGATTGATCTGAACAAGGTGGCTCGTAAAA 106
Query 185 TCGAAGTGGATAATCGTATTCCTCTCCGTAATTACTACCGCATCGCCGATAATCTCCTCC 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TCGAAGTCGATAATCGTATTCCTCTCCGTAATTACTACCGCATCGCCGATAATCTCCTCC 166
Query 245 GACAGGCCAGTATATATCGCGAAGAGAAGAATGTGGTGGATTTGTATATCATGCTTCTTA 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GACAGGCCAGTATATATCGGGAAGAGAAGAATGTGGTGGATTTGTATATCATGCTTCTTA 226
Query 305 GATATTCAAGTTTGATTTCTGAAACAATTCCTTTCCATCGAGATTACCAGGCATCGCTTC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 GATATTCAAGTTTGATTTCTGAAACAATTCCTTTCCATCGAGATTACCAGGCATCGCTTC 286
Query 365 CACAAGAAAGACTTGGGAGTAGGAAGAGGTTGCGTGCTGTAATCAATGAGCTCGAGTCTC 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CACAAGAAAGACTTGGGAGTAGGAAGAGGTTGCGTGCTGTAATCAATGAGCTCGAGTCTC 346
Query 425 TGAAACCGGAATTCAACCAGCTAGTGGATAAGCTGAACAGAGTTGAGGATGAATCCCGTC 484
|||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||
Sbjct 347 TGAAACCGGAATTCAACCGGTTAGTGGATAAGCTGAATAGAGTTGAGGATGATTCCCATC 406
Query 485 AGGATGGAAGTGATCTCCCGGTCGTATCATATAGTTCAGATGCTGTTGAGTGGCCTCCTG 544
||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 407 AGGTTGGAAGTGATCTCCCGATTGTATCATATAGTTCAGATGCTGTTGAGTGGCCTCCTG 466
Query 545 CTCACAAAGCTTCATACTCCAGACCTGATATTAACAAGCCCTTACCGACATCTCAACCAT 604
|||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 467 CTCATAAAGCTTCATACTCCGGACCTGATATTAACAAGCCATTGCCGACATCTCAACCAT 526
Query 605 CCTGGACGTATAACAATAATCTGACTTCATCATCAAATCGTACACAGATTGATCAGCAGT 664
|||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 527 CCTGGACGCATAACAATAATCTGACATCATCTTCAAATCGCACACAGATTGATCAGCAAT 586
Query 665 TCCAGAAGCTATCTTTTGATTTCCTGCCTCCAAACCAAGCAACCTTGTCAAGACATTCAT 724
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 587 TCCAGAAGCTATCTTTTGATTTTCTGCCTCCAAACCAAGCAACCTTGTCAAGGCATTCAT 646
Query 725 TTCTAGGTCCGAATGGTCTTAAAAGGCAAATGG-TTGCACCCAAGTCAGAGATAAAGGTT 783
||||||||||||||||||||||||| ||| ||| ||||||||| ||| ||||||||||||
Sbjct 647 TTCTAGGTCCGAATGGTCTTAAAAGTCAA-TGGGTTGCACCCACGTCGGAGATAAAGGTT 705
Query 784 CAATATCCGAGTAATACAGATTGGGGTTCTGCGGACAATTCAGGTTTAATTGAAGCTGGA 843
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 706 CAATATCCGAGTAATACGGATTGGGGTTCTGCGGACAATTCTGGTTTAATTGAAGCTGGA 765
Query 844 CCTAGCAGTTCCTCAGCATCACTTAATGGTGATTCTCAAGAAGTCTCAACACTGAACTCT 903
|| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 766 CCAAGCGGTTCCTCAGCATCACATAATGGTGATTCTCAAGAAGTCTCAACGCTGAACTCT 825
Query 904 GTGCTCTCCTTAGATGATGGTCGATGGCAGCGTCATTCTGAGGCAGTAAATTCCCAGTTT 963
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 826 GTGCTCTCCTTAGATGATGGTCGATGGCAGCGTCATTCTGTGGCAGTAAATTCCCAGTTT 885
Query 964 ATTAGCGACGCAACTGAAGACCCGTTTCAGTTTGTCGGTATGAAGCAACCTTCCCCTCCT 1023
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ATTAGTGACGCAACTGAAGACCCGTTTCAGTTTGTCGGTATGAAGCAACCTTCCCCTCCT 945
Query 1024 CCCGTGCTTGCTCAAGTGCATCAAGAGTTAGCCCAAATTTGCCCATCTAAAGTAGCTGAT 1083
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 946 CCCGTGCTTGCCCAAGTGCATCAAGAGTTAGCCCAAATTTGCCCATCTAAAGTTGCTGAT 1005
Query 1084 CCTAGACCAGGACCTGCAATTCCTTCCCTAGAAGGAAAAGAGGGCAGCAATTCTTATCAG 1143
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1006 CCTAGACCAGGACCTGCAATTCCTTCTCTAGAAGGAAAAGAGGGTAGCAATTCTTATCAG 1065
Query 1144 CATTTGCATGTGCCTGTGCGCATAATGGATGATTTCCTAAGGCTAGCTCGGTCAAACACA 1203
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CATTTGCATGTGCCCGTGCGCATAATGGATGATTTCCTAAGGCTAGCTCGGTCAAACACA 1125
Query 1204 GAACGGAATTTAGAAACTTGTGGAGTACTTGCTGGTTCTCTGAAAAACAGGGTTTTTCAT 1263
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1126 GAAAGGAATTTAGAAACTTGTGGAGTACTTGCTGGCTCTCTGAAAAACAGGGTTTTTCAT 1185
Query 1264 ATCACTACTCTCATAATCCCAAAGCAGGAGTCTACCTCAGATTCTTGCCAAACACTAAAC 1323
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1186 ATCACTACTCTCATAATCCCAAAGCAGGAGTCTACTTCAGATTCTTGCCAAACACTAAAC 1245
Query 1324 GAAGAAGAAATATTCGAAGTACAGGACAGACTCTCTCTATTTCCCTTGGGTTGGATTCAT 1383
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GAGGAAGAAATATTCGAAGTACAGGACAGACTCTCTCTATTTCCCTTGGGTTGGATTCAT 1305
Query 1384 ACACACCCTACACAAACTTGCTTCATGTCATCAGTTGATCTACACACACACTACTCGTAT 1443
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1306 ACACATCCTACACAAACTTGCTTCATGTCATCAGTTGATCTTCACACACACTACTCATAT 1365
Query 1444 CAGATAATGCTACCGGAGGCGGTGGCAATCGTAATGGCACCAACAGACGAATCAACACCT 1503
|||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 1366 CAGATAATGCTACCGGAGGCAGTGGCAATTGTAATGGCTCCAACAGACGAGTCAACACCT 1425
Query 1504 CATGGAATATTCCATCTCTCTGATCCATCAGGCGTATCTGTGATCCGAAACTGCCAGCAA 1563
|| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1426 CACGGAATATTCCATCTCTCTGATCCATCAGGCGTATCAGTGATCCGTAATTGCCAGCAA 1485
Query 1564 CGAGGCTTCCACCCACACGAAGAATCAGAAGACGGTAACCCAATCTACGAGCATTGCTCA 1623
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1486 CGAGGCTTCCACCCACACGAAGAATCAGAAGACGGTAACCCAATATACGAGCATTGCTCA 1545
Query 1624 CACGTCTTCCTCAATGCCAAACTCAAATATGAAGTCCTCGATCTCCGCTAAAAGCCAA-C 1682
||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
Sbjct 1546 CACGTCTTCCTCAATGCCAAACTCAAATACGAAGTCCTGGATCTCCGCTAAAA-CCAAAC 1604
Query 1683 CTCC-ATCACCATGTTATTATTTTTCCTGGAG 1713
| || ||||||||| | ||||||||||| |||
Sbjct 1605 CCCCCATCACCATGCT-TTATTTTTCCTTGAG 1635
Score = 93.5 bits (50), Expect = 5e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 53 TTTCTCAGCGCCATTGATCCTTCGATCTCAGCAAAACTTTCGCCGGCAAAGTGATT 108
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1 TTTCTCAGCGCCATTGATCCTTCGATCTCAGCAAAACTTTCGCCGGAAAATTGATT 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5