BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16146.1
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355149 jgi|Araly1|355149|fgenesh1_pg.C_scaffold_7002322 472 2e-132
> Ahg355149 jgi|Araly1|355149|fgenesh1_pg.C_scaffold_7002322
Length=309
Score = 472 bits (255), Expect = 2e-132
Identities = 291/309 (94%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 109 ATGGCGACGGATTGCAATAGAGTCAACGATTTCTTGTTTTCTCAGCAGCAAGAGTCTACT 168
||| ||||||||||||| |||| | |||||||||||||||| ||||| ||||||||||||
Sbjct 1 ATGTCGACGGATTGCAACAGAGCCGACGATTTCTTGTTTTCACAGCAACAAGAGTCTACT 60
Query 169 TCTGGTGCAAATAAATACGGAGGACTTGTGCCAAAGAAAAAGCCTCTCATCTCTAAGGAT 228
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCTGGTGCAAATAAGTACGAAGGACTTGTGCCAAAGAAAAAGCCTCTTATCTCTAAGGAT 120
Query 229 TCCAAACGTGCTTTCTTTGATTCAGCAGATTGGGCTTTACTCAAGCAAGAAGCAAGTATA 288
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCAAACGTGCTTTCTTCGATTCAGCAGATTGGGCTTTACTCAAGCAAGAAGCAAGTATA 180
Query 289 GATCAGAGAACAATAGCGGCAATAGAAAAACTAAGACCCAAATTGCAGAGAACGCCTCGC 348
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GATCAGAGAACAATTGCGGCAATAGAGAAACTAAGACCCAAATTGCAGAGAACGCCTCGC 240
Query 349 AAGCAACTTTCTCCTAGGAGACCCACATGTGCGACGGGAAATGAGAATCTGACAGAGTCG 408
||||||||| | ||||| |||||||||||||| |||||| |||| |||||||||||||||
Sbjct 241 AAGCAACTTCCCCCTAGAAGACCCACATGTGCAACGGGACATGATAATCTGACAGAGTCG 300
Query 409 AGCTTTTAG 417
|||||||||
Sbjct 301 AGCTTTTAG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5