BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16155.1
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946663 jgi|Araly1|946663|scaffold_702892.1 2817 0.0
Ahg479163 jgi|Araly1|479163|fgenesh2_kg.3__1864__AT3G16950.2 1829 0.0
> Ahg946663 jgi|Araly1|946663|scaffold_702892.1
Length=1752
Score = 2817 bits (1525), Expect = 0.0
Identities = 1680/1755 (96%), Gaps = 10/1755 (1%)
Strand=Plus/Plus
Query 165 TCTCTCATTCACTCTCTCGT-ACACAATGCAATCGGTTCTTTCTCTTTCCTTCTCA-CAA 222
||||||| || ||||||| | ||||||||||||| | ||| ||||||||||||||| |||
Sbjct 1 TCTCTCACTCTCTCTCTC-TAACACAATGCAATCAGCTCTCTCTCTTTCCTTCTCACCAA 59
Query 223 GCATCGCTTCCTTTAGCGAATCGTACGCTTTGTTCATCCAACGCAGCTCC-T-T-CTACG 279
||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||
Sbjct 60 -CATCGCTTCCTTTAGCGAATCGTCCGCTTTGTTCATCCAACGCAGCTCCTTCTACTACG 118
Query 280 CCGAGAAATCTCCGGTTCTGTGGACTCCGGCGAGAAGCGTTTTGCTTCTCTCCGTCGAAG 339
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 119 CCGAGAAATCTCCGGTTCTGTGGACTCCGGCGAGAAGCGTTTGGTTTCTCTCCGTCGAAG 178
Query 340 CAATTGACCTCGTGCCG-TTTCCATATTCAGAGTAGGAGAATCGAAGTCTCCGCCGCTGC 398
|| ||||| ||| |||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 179 CAGTTGACATCGCGCCGATTT-CAAATTCAGAGTAGGAGAATCGAAGTCTCCGCCGCTGC 237
Query 399 TTCTTCTTCCGCTGGAAATGGAGCTCCATCGAAATCATTCGATTATGATTTGATCATTAT 458
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 TTCTTCTTCCGCTGGAAATGGAGCTCCATCGAAATCGTTCGATTATGATTTGATCATTAT 297
Query 459 CGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGGGACTCAAAAC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGGGACTCAAAAC 357
Query 519 TGCTATCATTGAAGGAGATGTTGTTGGAGGTACTTGCGTTAACAGAGGCTGTGTGCCTTC 578
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 358 TGCCATCATTGAAGGAGATGTTGTTGGAGGGACTTGCGTTAATAGAGGCTGTGTGCCTTC 417
Query 579 CAAAGCTCTACTTGCTGTTAGTGGTAGGATGAGGGAACTCCAGAACGAACATCACATGAA 638
|||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 418 AAAAGCTCTCCTTGCTGTTAGTGGTAGAATGCGGGAACTTCAGAACGAACATCACATGAA 477
Query 639 GGCTTTTGGTTTGCAGGTTTCAGCTGCTGGTTATGACCGCCAAGGTGTGGCTGACCACGC 698
|||||||||||||||| |||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 478 GGCTTTTGGTTTGCAGATTTCAGCTGCCGGTTATGACCGTCAGGGTGTGGCTGACCATGC 537
Query 699 AAGTAACCTGGCTACCAAAATTAGGAATAATCTCACCAATTCTATGAAGGCACTTGGTGT 758
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 538 GAGTAATCTGGCTACCAAAATTAGGAACAATCTCACCAATTCAATGAAGGCACTTGGTGT 597
Query 759 TGACATATTGACAGGGTTTGGCGCTGTTCTGGGCCCACAAAAGGTTAAATATGGTGACAA 818
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 598 TGACATATTGACAGGGTTTGGGGCTGTCCTGGGTCCACAAAAGGTTAAATATGGTGACAA 657
Query 819 TATTATCACCGGAAAAGATATAATCATCGCAACTGGATCTGTACCGTTCGTCCCGAAAGG 878
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 658 TATTATCACTGGAAAAGATATAATCATCGCAACTGGATCTGTACCGTTTGTCCCAAAAGG 717
Query 879 AATTGAAGTTGATGGAAAGACTGTTATCACAAGTGATCATGCATTGAAATTGGAGTCCGT 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATTGAAGTTGATGGAAAGACTGTTATCACAAGTGATCATGCATTGAAATTGGAGTCCGT 777
Query 939 TCCTGACTGGATTGCGATAGTAGGAAGTGGTTATATCGGTCTTGAGTTCAGTGATGTTTA 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCCTGACTGGATTGCGATAGTAGGAAGTGGTTATATCGGTCTTGAGTTCAGTGATGTTTA 837
Query 999 CACGGCCCTTGGAAGTGAGGTAACTTTTATTGAGGCACTGGATCAACTAATGCCTGGATT 1058
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 838 CACGGCCCTTGGAAGTGAGGTAACTTTTATTGAGGCTCTGGATCAGCTAATGCCTGGGTT 897
Query 1059 TGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATACAAGAAAAATTGACTA 1118
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 TGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATCCAAGAAAAATTGACTA 957
Query 1119 CCATACTGGAGTATTTGCAAGCAAAATCACTCCAGCAAAGGATGGGAAACCAGTGCTGAT 1178
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 958 TCATACTGGAGTGTTTGCAAGCAAAATCACTCCAGCAAAGGATGGGAAACCAGTGATGAT 1017
Query 1179 TGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGGTTGACGCTGCTCT 1238
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 TGAGCTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGGTTGACGCTGCTTT 1077
Query 1239 AATTGCTACTGGAAGAGCTCCATTCACCAATGGTCTTGGCCTGGAAAATATCAATGTTAC 1298
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 AATTGCTACTGGAAGAGCGCCATTCACCAATGGTCTTGGACTGGAAAATATCAATGTTGT 1137
Query 1299 CACACAAAGAGGTTTTATACCAGTTGATGAGCGAATGCGTGTTATTGATGGAAATGGAAA 1358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GACACAAAGAGGTTTTATACCAGTTGATGAGCGAATGCGTGTTATTGATGGAAATGGAAA 1197
Query 1359 GCTGGTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGC 1418
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1198 GCTGGTTCCCCACTTGTACTGCATCGGTGATGCCAACGGTAAAATGATGCTTGCTCATGC 1257
Query 1419 AGCTAGTGCTCAAGGAATTTCTGTGGTGGAGCAAGTCACAGGTAGAGATCATGTGCTTAA 1478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGCTAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAGGTAGAGATCATGTGCTTAA 1317
Query 1479 TCATCTTAGCATCCCAGCTGCTTGTTTTACTCATCCTGAAATAAGTATGGTGGGATTGAC 1538
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1318 TCATCATAGCATCCCAGCTGCTTGTTTTACTCATCCTGAAATCAGTATGGTGGGATTGAC 1377
Query 1539 AGAGCCTCAAGCGAGAGAGAAAGCTGAGAAAGAGGGATTCAAAGTAAGTATCGCCAAGAC 1598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGAGCCTCAAGCAAGAGAGAAAGCTGAGAAAGAGGGATTCAAAGTAAGTATCGCCAAGAC 1437
Query 1599 AAGTTTCAAGGCAAACACAAAGGCCCTAGCCGAAAATGAAGGAGAAGGACTCGCTAAGAT 1658
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAGTTTCAAGGCAAATACAAAGGCCCTAGCCGAAAATGAAGGAGAAGGACTCGCTAAGAT 1497
Query 1659 GATATACAGACCTGACAATGGTGAAATCCTTGGAGTTCATATATTTGGATTGCATGCTGC 1718
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1498 GATATACAGACCTGACAATGGTGAAATCCTTGGAGTTCATATCTTTGGGTTGCATGCTGC 1557
Query 1719 TGATCTTATCCATGAAGCATCAAACGCGATTGCTTTAGGAACACGTATTCAGGACATAAA 1778
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1558 TGATCTTATCCACGAAGCATCCAACGCGATTGCTTTAGGAACACGCATTCAGGACATAAA 1617
Query 1779 ACTTGCTGTTCATGCACATCCAACACTGTCTGAAGTTGTAGACGAACTGTTTAAAGCAGC 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 ACTTGCTGTTCATGCACATCCAACACTGTCTGAAGTTGTAGACGAACTGTTTAAAGCAGC 1677
Query 1839 CAAGGTCGATAGTCCAGCTTCAGTAACAGCACAAAGTGTGAAAGTTACTGTGTAAA-CAT 1897
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 1678 CAAGGTCGATAGTCCAGCTTCAGTAACAGCACAAAGTGTAAAAGTTGCTGTGTAAAACAA 1737
Query 1898 GAAGAATTTAAGAGC 1912
|||||||||||||||
Sbjct 1738 GAAGAATTTAAGAGC 1752
> Ahg479163 jgi|Araly1|479163|fgenesh2_kg.3__1864__AT3G16950.2
Length=2065
Score = 1829 bits (990), Expect = 0.0
Identities = 1402/1600 (88%), Gaps = 31/1600 (2%)
Strand=Plus/Plus
Query 273 TTCTACGCCGAGAAATCTCCGGTTCTGTGGACTCCGGCGAGAAGCGTTTTGCTTCTCTCC 332
||||||||| | || |||||||||||| ||||||||||| ||||||||| | ||||||||
Sbjct 200 TTCTACGCCTACAAGTCTCCGGTTCTGCGGACTCCGGCGGGAAGCGTTTGGTTTCTCTCC 259
Query 333 GTCGAAGCAATTGAC-CT---C-GTG-CCG-TTTCCATATT-CAGAGTAGGAGA--A-TC 381
|||||| || ||| | | | ||| || ||| || || || ||||||| | | ||
Sbjct 260 GTCGAATCAGTTGGCTTTGAACAGTGAACGAATTCGAT-TTCCA-AGTAGGAAATCATTC 317
Query 382 GAAGTCTCCGCCGCTGCTTCTTCTTCCGCTGGAAATGGAGCTCCATCGAAATCATTCGAT 441
|||||||||| ||||||| | ||| || || ||||| | ||||| ||||||
Sbjct 318 CAAGTCTCCGCTTCTGCTTC-GAGT--AATGGTAACGGCGCTCCGCCTAAATCTTTCGAT 374
Query 442 TATGATTTGATCATTATCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTC 501
|| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 375 TACGATTTGATCATCATCGGAGCTGGAGTTGGTGGCCACGGAGCTGCTTTGCACGCCGTT 434
Query 502 GAGAAGGGACTCAAAACTGCTATCATTGAAGGAGATGTTGTTGGAGGTACTTGCGTTAAC 561
|| |||||||| |||||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct 435 GAAAAGGGACTTAAAACTGCCATTATAGAAGGAGATGTTGTTGGAGGGACTTGTGTTAAC 494
Query 562 AGAGGCTGTGTGCCTTCCAAAGCTCTACTTGCTGTTAGTGGTAGGATGAGGGAACTCCAG 621
||||| ||||| |||||||||||||| ||||||||||||||| | ||| ||||||| |||
Sbjct 495 AGAGGATGTGTACCTTCCAAAGCTCTTCTTGCTGTTAGTGGTCGAATGCGGGAACTTCAG 554
Query 622 AACGAACATCACATGAAGGCTTTTGGTTTGCAGGTTTCAGCTGCTGGTTATGACCGCCAA 681
|||||||||||||||||| | |||||| | ||||||||||||||||| ||||| || ||
Sbjct 555 AACGAACATCACATGAAGTCCTTTGGTCTCCAGGTTTCAGCTGCTGGGTATGATCGTCAG 614
Query 682 GGTGTGGCTGACCACGC-AAGTAACCTGGCTACCAAAATTA-GGAATAATCTCACCAATT 739
|||||||| ||||| || || ||||||||||||||||| || | || ||||| |||||||
Sbjct 615 GGTGTGGCAGACCATGCTAA-TAACCTGGCTACCAAAA-TACGAAACAATCTGACCAATT 672
Query 740 CTATGAAGGCACTTGGTGTTGACATATTGACAGGGTTTGGC-GCTGTTCTGGGCCCACAA 798
| ||||||||||||||||||||||||||||| || |||||| | ||||||||| ||||||
Sbjct 673 CAATGAAGGCACTTGGTGTTGACATATTGACTGGATTTGGCAG-TGTTCTGGGTCCACAA 731
Query 799 AAGGTTAAATAT-GG--TGACAATATTATCACCGGAAAAGATATAATCATCGCAACTGGA 855
|||||||||||| || |||||||||||||| | ||||||||||||||| || ||||||
Sbjct 732 AAGGTTAAATATGGGAAGGACAATATTATCACTGCAAAAGATATAATCATTGCCACTGGA 791
Query 856 TCTGTACCGTTCGTCCCGAAAGGAATTGAAGTTGATGGAAAGACTGTTATCACAAGTGAT 915
||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 792 TCTGTGCCGTTTGTCCCTAAAGGCATTGAAGTTGATGGAAAGACTGTAATCACCAGTGAC 851
Query 916 CATGCATTGAAATTGGAGTCCGTTCCTGACTGGATTGCGATAGTAGGAAGTGGTTATATC 975
||||| |||||||||||||| || ||||| |||||||| || |||||||||||||||||
Sbjct 852 CATGCTTTGAAATTGGAGTCTGTCCCTGAGTGGATTGCAATTGTAGGAAGTGGTTATATT 911
Query 976 GGTCTTGAGTTCAGTGATGTTTACACGGCCCTTGGAAGTGAGGTAACTTTTATTGAGGCA 1035
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 912 GGTCTTGAGTTCAGTGATGTTTACACAGCACTTGGAAGTGAGGTAACTTTTATTGAAGCA 971
Query 1036 CTGGATCAACTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTA 1095
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||| |
Sbjct 972 CTGGATCAGCTAATGCCTGGATTTGATCCTGAAATCAGTAAGCTAGCTCAGAGGGTTTTG 1031
Query 1096 ATAAATACAAGAAAAATTGACTACCATACTGGAGTATTTGCAAGCAAAATCACTCCAGCA 1155
|||||| ||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1032 ATAAATCCAAGAAAGATTGACTATCATACTGGAGTCTTTGCAAGCAAAATTACTCCAGCA 1091
Query 1156 AAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGAT 1215
||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||
Sbjct 1092 AAGGATGGGAAACCAGTTTTGATTGAGCTTATTGATGCCAAAACCAAGGAACCTAAGGAT 1151
Query 1216 ACTTTGGAGGTTGACGCTGCTCTAATTGCTACTGGAAGAGCTCCATTCACCAATGGTCTT 1275
|| |||||||| || |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1152 ACCTTGGAGGTAGATGCTGCTCTTATTGCTACTGGAAGAGCTCCATTCACCAATGGACTT 1211
Query 1276 GGCCTGGAAAATATCAATGTTACCACACAAAGAGGTTTTATACCAGTTGATGAGCGAATG 1335
||| |||||||| ||||||| ||||| |||||||| ||||||||||||||| |||||
Sbjct 1212 GGCTTGGAAAATGTCAATGTCGTGACACAGAGAGGTTTCATACCAGTTGATGAGAGAATG 1271
Query 1336 CGTGTTATTGATGGAAATGGAAAGCTGGTTCCCCACTTGTACTGCATCGGTGATGCCAAT 1395
||||| || ||||||||||| | |||||||| ||||||||||||| ||||||||||||
Sbjct 1272 CGTGTGATCGATGGAAATGGGACTCTGGTTCCGAACTTGTACTGCATTGGTGATGCCAAT 1331
Query 1396 GGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGTGGTGGAGCAAGTC 1455
|||||| |||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1332 GGTAAATTGATGCTTGCACATGCAGCCAGTGCCCAAGGAATTTCTGTGGTCGAGCAAGTC 1391
Query 1456 A-CAGGTAGAGATCATGTGCTTAATCATCTTAGCATCCCAGCTGCTTGTTTTACTCATCC 1514
| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1392 AGC-GATAGAGATCATGTGCTTAATCATCTTAGCATCCCAGCTGCTTGCTTTACTCATCC 1450
Query 1515 TGAAATAAGTATGGTGGGATTGACAGAGCCTCAAGCGAGAGAGAAAG-CTGAGAAAGAGG 1573
|||||| || ||||| |||||||||||||||||||||| ||| |||| | ||||| || |
Sbjct 1451 TGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCGAAAGAAAAAGGC-GAGAAGGAAG 1509
Query 1574 GATTCAAAGTAAGTATCGCCAAGACAAGTTTCAAGGCAAACACAAAGGCCCTAGCCGAAA 1633
|||| ||||| ||| | |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1510 GATTTAAAGTTAGTGTTGCCAAGACAAGTTTCAAGGCTAACACAAAGGCCCTAGCTGAAA 1569
Query 1634 ATGAAGGAGAAGGACTCGCTAAGATGATATACAGACCTGACAATGGTGAAATCCTTGGAG 1693
|||||||||||||| |||| |||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1570 ATGAAGGAGAAGGAATCGCAAAGATGATATACCGACCTGACAACGGTGAAATCCTAGGAG 1629
Query 1694 TTCATATATTTGGATTGCATGCTGCTGATCTTATCCATGAAGCATCAAACGCGATTGCTT 1753
|||||||||||||| ||||||| ||||| |||||||||||||| || || ||||| |||
Sbjct 1630 TTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATCGCTC 1689
Query 1754 TAGGAACACGTATTCAGGACATAAAACTTG-CTGTTCATGCACATCCAACACTGTCTGAA 1812
|||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 1690 TAGGAACACGCATTCAGGACATAAAA-TTGGCAGTTCATGCACATCCAACACTGTCTGAG 1748
Query 1813 GTTGTAGACGAACTGTTTAAAGCAGCCAAGGTCGATAGTC 1852
||| | ||||||||||| |||||||||||||| || ||||
Sbjct 1749 GTTCTCGACGAACTGTTCAAAGCAGCCAAGGTTGAAAGTC 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5