BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16160.2
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493268 jgi|Araly1|493268|fgenesh2_kg.7__2701__AT4G16160.2 1037 0.0
> Ahg493268 jgi|Araly1|493268|fgenesh2_kg.7__2701__AT4G16160.2
Length=677
Score = 1037 bits (561), Expect = 0.0
Identities = 643/682 (94%), Gaps = 8/682 (1%)
Strand=Plus/Plus
Query 1 GAAGCAACAAGTGAAGAAAGAAAGaaaaaaaTGGAGAAGAGTGGAGGAAGAATTGTAATG 60
||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1 GAAGCAAGAAGTGAAGAAAGAAAGAAAAATATGGATAAGAGTGGAGGAAGAATGGTAATG 60
Query 61 GATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTCTTCTTAAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTCTTCTCAAC 120
Query 121 CGTATCGCAGATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCTTTACAAGCCGTGTCAAGG 180
|||||||| |||||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 121 CGTATCGCCGATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCGTTACAAGCGGTATCGAGG 180
Query 181 GAAGCTTACTTTACCGTGGTTGACGGGGCAGGTTTTGACTCGAACAACGTGGGTCCACCG 240
|||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 181 GAAGCTTACTTTACGGTGGTTGAGGGGGCAGGGTTTGACTCGAACAACGTTGGTCCACCG 240
Query 241 TCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAA 300
Query 301 TCTCTTGATGCATTGGTGAAGAACACAGGAAAAGAATCTCTCCAATGGGGGCTAGCGGCA 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TCTCTTGATGCATTGGTGAAGAACACAGGAAAAGAATCTCTCCAGTGGGGGCTAGCGGCT 360
Query 361 GGGTTATACTCAGGTATCACTTACGGTATGACAG-AGGTTCGTGGAGGAGCTCATGATTG 419
||||| ||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 361 GGGTTGTACTCAGGTATCACTTACGGTATGA-AGGAGGTTCGTGGGGGAGCTCATGATTG 419
Query 420 GCGGAACAGCGCGGTAGCTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCTGA 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GCGGAACAGCGCGGTGGCTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCCGA 479
Query 480 GAGGACAAGCCATGAGCAAGTGGTTCAGTCTGCTCTCACTGGAGCAGCTATTTCCACCGC 539
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 GAGGACAAGCCATGAGCAAGTTGTTCAGTCTGCTCTCACTGGAGCAGCCATTTCCACCGC 539
Query 540 TGCTAATCTCCTTTCTAGCGTTTTCTAGATGATTTGT-ATTAGAAGCTTTAAT-GCATAA 597
||||||||||||||||| |||||||||||||||| | ||||||| ||||||| | |||
Sbjct 540 CGCTAATCTCCTTTCTAGTGTTTTCTAGATGATTT-TCATTAGAAACTTTAATTG--TAA 596
Query 598 GGGTTGTTTCATGTATCAGTTATGTTTCTTTTTGTGAAAACGAATTCGCTAAAGGTCTAC 657
|||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 597 GGGTTGTTTCTTGTATCAGTTATGTTT-TTTTTGTGAAAACAAATTCTCTAAAGGTCTAC 655
Query 658 TAAGATCTTTTCCTGAAACTCT 679
||||||||| || | |||||||
Sbjct 656 TAAGATCTTGTCTTAAAACTCT 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28096589829
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5