BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16195.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946654 jgi|Araly1|946654|scaffold_702883.1 616 6e-176
> Ahg946654 jgi|Araly1|946654|scaffold_702883.1
Length=520
Score = 616 bits (333), Expect = 6e-176
Identities = 440/490 (90%), Gaps = 14/490 (3%)
Strand=Plus/Plus
Query 1 ATGGATATTCCAAAGCAATATCTATCACTATTCATATTGATTATCTTCATAACTACAAAA 60
||| |||||||||| ||||||||| || |||||||| || ||||||||||||| ||||||
Sbjct 21 ATGAATATTCCAAAACAATATCTACCAATATTCATACTGCTTATCTTCATAACCACAAAA 80
Query 61 TTATCACAAGCCGACCATAAA-AACGACATTCCAGTTCCCAACGATCCATCATCAACAAA 119
|||||||||||||||| ||| ||| ||| ||| ||||||||||||||||||||||| ||
Sbjct 81 CTATCACAAGCCGACCA-AAATAACAACAGTCCGGTTCCCAACGATCCATCATCAACCAA 139
Query 120 TTCTGTGTTTCCTACCTCGAAAAGAACCGTGGAAATCAATAATGATCTCGGTAATCAGCT 179
|||| |||||||| | ||||| |||||| ||||||| ||| |||||||||||||||||
Sbjct 140 TTCTCTGTTTCCTGGCGGGAAAATAACCGTAGAAATCATTAACGATCTCGGTAATCAGCT 199
Query 180 AACGTTACTGTATCATTGTAAATCAAAAGACGATGAT-TTAGGTAACCGGACTCTGCAAC 238
||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 200 AACGTTACTCTATCATTGTAAATCAAAAGACGATGATCTT-GGTAACCGGACTTTGCAAT 258
Query 239 CAGGTGAGTCGTGGTCTTTTAGTTTCGGGCGTCAATTCTTTGGAAGGACGTTGTATTTTT 298
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 259 CAGGTGAGTCGTGGTCTTTTAGATTCGGGCGTCAATTCTTTGGAAGGACGTTGTATTTTT 318
Query 299 GTAGTTTTAG-TTGGCCAAATGAATCGCATTCGTTCGATATATATAAAGACCATCGAGAT 357
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GTAATTTT-GATTGGCCAAATGAATCGCATTCGTTCGATATATATAAAGACCATCGAGAT 377
Query 358 AGCGGCGGTGATAACAAGTGCGAGAGCGACAGGTGTGTGTGGAAGATAAGAAGAAAC-GG 416
||| |||||||||| |||||||| | | ||||||||||||||||| | |||| ||
Sbjct 378 AGCTCCGGTGATAACTGGTGCGAGA---A--G-TGTGTGTGGAAGATAAGGA-AAACCGG 430
Query 417 ACCTTGTAGGTTTAACGATGAAACGAAGCAGTTTGATCTTTGTTATCCTTGGAATAAATC 476
||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||| ||
Sbjct 431 ACCTTGTCGGTTTAACGATGGAACTAAGCAGTTTGATATTTGTTATCCTTGGAATAAGTC 490
Query 477 TTTGTATTGA 486
||||||||||
Sbjct 491 TTTGTATTGA 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5