BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16210.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890633 jgi|Araly1|890633|Al_scaffold_0007_2619 1242 0.0
> Ahg890633 jgi|Araly1|890633|Al_scaffold_0007_2619
Length=798
Score = 1242 bits (672), Expect = 0.0
Identities = 757/799 (95%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 71 ATGGATCAAACAGTATCGGAAAATCTCATTCAGGTGAAGAAAGAATCAGGCGGGATCGCC 130
|||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATCAAACAATATCGGAATATCTCATCCAGGTGAAGAAGGAATCAGGCGGGATCGCC 60
Query 131 GTCATCACAATCAACCGTCCGAAATCTCTCAATTCACTCACGAGAGCGATGATGGTTGAT 190
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 ATCATCACAATCAACCGTCCGAAATCTCTCAATTCGCTCACGAGAGCGATGATGGTGGAT 120
Query 191 CTCGCCAAGGCATTCAAGGATATGGACTCCGACGAATCGGTCCAGGTCGTGATTTTCACC 250
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGCCAAGGCATTTAAGGATATGGACTCCGACGAATCGGTCCAGGTCGTGATTTTCACC 180
Query 251 GGATCAGGTCGATCTTTCTGCTCTGGCGTTGATTTGACTGCGGCGGAGTCTGTTTTCAAA 310
||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GGATCGGGTCGATCTTTTTGCTCTGGCGTTGATTTGACTGCGGCGGAGTCAGTTTTCAAG 240
Query 311 GGAGACGTGAAGGATCCGGAAACCGACCCGGTTGTGCAGATGGAGCGGTTACGTAAACCG 370
|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 241 GGAGACGTGAAGGATCCGGAAACCGACCCGGTAATTCAGATGGAGCGGTTACGAAAACCG 300
Query 371 ATCATCGGAGCTATTAACGGTTTTGCCATCACCGCCGGGTTTGAACTCGCCTTGGCCTGT 430
||||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||||
Sbjct 301 ATCATCGGAGCTATTAACGGTTTCGCCATCACCGCTGGGTTCGAGCTAGCCTTGGCCTGT 360
Query 431 GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGGTTTGGGATA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGGTTTGGGATA 420
Query 491 TTTCCTTCATGGGGTTTGTCTCAGAAGCTGTCGAGGATCATCGGAGCAAACAAAGCTCGA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTCCTTCATGGGGTTTGTCTCAGAAGCTGTCGAGGATCATCGGAGCAAACAAAGCTCGA 480
Query 551 GAAGTTTCTTTAACATCGATGCCACTGACAGCAGACGTGGCTGGGAAGTTAGGGTTTGTA 610
|||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 481 GAAGTTTCTTTAACATCGCTGCCATTGACAGCTGACGTAGCTGGGAAGTTAGGGTTTGTT 540
Query 611 AACCATGTGGTTGAAGAAGGAGAAGCGTTAAAGAAAGCTAGAGAAATCGCAGAGGCTATA 670
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 541 AACCATGTGGTTGAAGAAGGAGAAGCTTTGAAGAAAGCTAGAGAAATAGCAGAGGCTATA 600
Query 671 ATCAAGAATGAACAAGGCATGGTTCTGAGGATTAAATCCGTTATCAATGATGGACTTAAG 730
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 601 ATCAAGAATGAACAAGGCATGGTTCTTAGGATTAAATCGGTTATCAATGATGGACTAAAG 660
Query 731 CTTGATCTTGGGCATGCTCTCACACTAGAAAAGGAGCGAGCTCACGCGTATTACAGTGGG 790
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 661 CTTGATCTTGGACATGCTCTCACACTCGAAAAGGAGCGAGCTCACGCGTATTACAATGGG 720
Query 791 ATGACGAAGGAACAGTTTA-GAAAGATGCAGGAGTTTATAGCCGGACGTGGATCCAAGAA 849
||||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||
Sbjct 721 ATGACGAAGGAACAGTTTAAGAA-GATGCAAGAGTTTATTGCTGGACGTGGATCCAAGAA 779
Query 850 ACCTTCTTCTAAGTTGTAG 868
|||| |||| |||||||||
Sbjct 780 ACCTACTTCAAAGTTGTAG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5