BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16230.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355138 jgi|Araly1|355138|fgenesh1_pg.C_scaffold_7002311 1367 0.0
Ahg946647 jgi|Araly1|946647|scaffold_702876.1 998 0.0
Ahg887617 jgi|Araly1|887617|Al_scaffold_0507_3 745 0.0
> Ahg355138 jgi|Araly1|355138|fgenesh1_pg.C_scaffold_7002311
Length=1107
Score = 1367 bits (740), Expect = 0.0
Identities = 916/1002 (91%), Gaps = 7/1002 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTTGCTTGTATTTCTTTGCCAAATTATAG-TATTATCGGTCTTGTTCTTCTCCGA 59
|||||||||||||| ||||||| |||| |||||| | |||||||||||||||||||||||
Sbjct 1 ATGTCGTTGCTTGTTTTTCTTTTCCAAGTTATAGCT-TTATCGGTCTTGTTCTTCTCCGA 59
Query 60 GGTGTGCCTTGCCGGTaaaaaaaTTCCAGCAAATTTTGTGTTCGGAGATTCATTGGTGGA 119
|||||| | |||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 60 GGTGTGTCATGCCGGTAAAAACATTCCGGCGAATTTTGTGTTCGGAGATTCATTGGTGGA 119
Query 120 TGCCGGAAACAACAACTACTTAGCCACATTGTCAAAGGCTAATTATGTTCCTAATGGGAT 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 TGCCGGAAACAACAACTACTTAGCCACATTGTCAAAGGCTAATTATGATCCTAATGGGAT 179
Query 180 CGATTTTGGATCACCTACTGGTCGATTCACTAACGGAAGAACAATCGTCGATATCGTATA 239
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 180 CGATTTTGGATCACCTACTGGGAGATTCACCAACGGAAGAACAATCGTCGATATCGTATA 239
Query 240 TCAAGCATTAGGTTCCGACGAGTTAACTCCACCATACTTAGCACCAACAACAAGCGGATC 299
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 240 TCAAGCATTAGGTTCCGACGAATTAACTCCACCGTACTTAGCACCAACAACAAGAGGATA 299
Query 300 TCTCATTCTCAATGGCGTTAATTATGCTTCGGGCGGAAGTGGAATTCTCAATTCCACCGG 359
||||||||| |||||||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 300 TCTCATTCTTAATGGCGTTAATTATGCTTCTGGCGGAAGTGGAATCCTCAATTCTACGGG 359
Query 360 AAAATTATTTGGCGAACGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAAG 419
|||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAAATATTTGGAGAGCGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAAG 419
Query 420 ACAAGACATCATTTCTTGGATCGGTGAATCCGAAGCCGCTAAATTATTCCGGTCAGCAAT 479
|| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 420 ACGAGACATAATTTCTTGGATTGGTGAATCCGAAGCGGCTAAATTATTCCGGTCAGCAAT 479
Query 480 TTTCTCGGTTACGACAGGTTCTAATGATCTAATCAACAATTATTTCACTCCGGTCATATC 539
||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| | ||
Sbjct 480 TTTCTCGGTTACGACCGGTTCAAACGATCTAATCAACAATTATTTCACCCCGGTGGTGTC 539
Query 540 AACCCTTCAACGGAAAGT-AGTAGCTCCAGAAGTCTTTGTTGATACAATGATCTCAAAAT 598
|||| || |||||||||| | | |||| |||||||| || |||||||||||||||| ||
Sbjct 540 AACCGTTGAACGGAAAGTCAC-ATCTCCCGAAGTCTTCGTGGATACAATGATCTCAAGAT 598
Query 599 TTCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAATCGTGGTGATTAATA 658
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 TCCGATTACAACTCACCAGATTGTACCAATTTGGTGCGAGGAAAATCGTGGTGATTAATA 658
Query 659 TTGGTCCCATCGGTTGTATACCATTCGAGAGAGAGTCTGATCCAGCCGCTGGAAAT-AAC 717
|||||||||| ||||||||||| ||||||||||| |||||||| | |||||| || ||
Sbjct 659 TTGGTCCCATTGGTTGTATACCGTTCGAGAGAGAAACTGATCCAACGGCTGGAGATGAA- 717
Query 718 TGTTTGGCCGAACCTAATGAGGTTGGCACAAATGTATAATCTGAAGCTGAAAACACTCGT 777
|||| || ||||| ||||| || |||||||||||||||| | ||||| ||||| || ||
Sbjct 718 TGTTCGGTTGAACCAAATGAAGT-GGCACAAATGTATAATATCAAGCTTAAAACCCTAGT 776
Query 778 AGAAGAGTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTATGGTGACGTTTTTCGCAT 837
||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 777 AGAGGATTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTACGCTGATGTTTTTCGCAT 836
Query 838 TGTTGATGATATTATACAAAATTATTCATCTTACGGTTTTGAGAGTGAGAAGATTCCTTG 897
|||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 837 TGTTTATGATATCCTACAAAATTATTCATCTTACGGTTTTGAAAGTGAGAAGATTCCGTG 896
Query 898 TTGTTCGTTAGTTGGGAAAGTAGGTGGGCTGATTCCATGTGGTCCACCTTCAAAAGTATG 957
|||||| ||| |||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 897 TTGTTCATTACTTGGAAAAGTAGGTGGGCTTATTCCATGTGGTCCATCTTCAAAAGTATG 956
Query 958 TATGGACCGTTCCAAATATGTATTTTGGGATCCTTACCATCC 999
|||||| |||||||||||||| ||||||||||||||||||||
Sbjct 957 TATGGATCGTTCCAAATATGTGTTTTGGGATCCTTACCATCC 998
> Ahg946647 jgi|Araly1|946647|scaffold_702876.1
Length=1234
Score = 998 bits (540), Expect = 0.0
Identities = 679/744 (91%), Gaps = 17/744 (2%)
Strand=Plus/Plus
Query 239 ATCAAGCATTAGGTTCCGACGAGTTAACTCCACCATACTTAGCACCAACAACAAGCGGAT 298
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 484 ATCAAGCATTAGGTTCCGACGAATTAACTCCACCGTACTTAGCACCAACAACAAGCGGAT 543
Query 299 CTCTCATTCTCAATGGCGTTAATTATGCTTCGGGCGGAAGTGGAATTCTCAATTCCACCG 358
||||||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 544 CTCTCATTCTCGACGGCGTTAATTATGCTTCCGGCGGAAGTGGAATCCTCAATTCCACCG 603
Query 359 GAAAATTATTTGGCGAACGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAA 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GCAAATTATTTGGCGAACGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAA 663
Query 419 GACAAGACATCATTTCTTGGATCGGTGAATCCGAAGCCGCTAAATTATTCCGGTCAGCAA 478
|||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||| ||||
Sbjct 664 GACAAGACATCATTTCTTGGATTGGTGATTCCCAAGCGGCTAAATTATTCCGGTCGGCAA 723
Query 479 TTTTCTCGGTTACGACAGGTTCTAATGATCTAATCAACAATTATTTCACTCCGGTCATAT 538
||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 724 TTTTCTCGGTTACAACCGGTTCTAATGATTTAATCAACAATTATTTCACTCCGGTCGTAT 783
Query 539 CAACCCTTCAACGGAAAGTAGTAGCTCCAGAAGTCTTTGTTGATACAATGATCTCAAAAT 598
|||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 784 CAACCCTTGAACGGAAAGTA-T--CTCCAGAAGTCTTTGTAGATACAATGATCTCAAAAT 840
Query 599 TTCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAATCGTGGTGATTAATA 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAATCGTGGTGATTAATA 900
Query 659 TTGGTCCCATCGGTTGTATACCATTCGAGAGAGAGTCTGATCCAGCCGCTGGAAAT-AAC 717
|||| ||||| ||||||||||||||||||||||||||||||||| | |||||| || ||
Sbjct 901 TTGGGCCCATTGGTTGTATACCATTCGAGAGAGAGTCTGATCCAACGGCTGGAGATGAA- 959
Query 718 TGTTTGGCCGAACCTAATGAGGTTGGCACAAATGTATAATCTGAAGCTGAAAACACTCGT 777
|||| || ||||| ||||| || |||||||||||||||| | ||||| ||||| || |
Sbjct 960 TGTTCGGTTGAACCAAATGAAGT-GGCACAAATGTATAATATCAAGCTTAAAACCCTATT 1018
Query 778 AGAAGAGTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTATGGTGACGTTTTTCGCAT 837
||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1019 AGAGGATTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTACGCTGATGTTTTTCGCAT 1078
Query 838 TGTTGATGATATTATACAAAATTATTCA-TCTTACGGTTTTGAGAGTGAGAAGATTCCTT 896
|||| |||||||| |||||||||||||| ||||||| | |||| ||| |||| |
Sbjct 1079 TGTTTATGATATTCTACAAAATTATTCAATCTTACG-T---GAGA---AGA---TTCCGT 1128
Query 897 GTTGTTCGTTAGTTGGGAAAGTAGGTGGGCTGATTCCATGTGGTCCACCTTCAAAAGTAT 956
||||||||||||| || |||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 1129 GTTGTTCGTTAGTAGGAAAAGTAGGTGGGCTGATTCCATGTGGCCCATCTTCTAAAGTAT 1188
Query 957 GTATGGACCGTTCCAAATATGTAT 980
||||||||||||||||||||||||
Sbjct 1189 GTATGGACCGTTCCAAATATGTAT 1212
> Ahg887617 jgi|Araly1|887617|Al_scaffold_0507_3
Length=699
Score = 745 bits (403), Expect = 0.0
Identities = 533/596 (89%), Gaps = 8/596 (1%)
Strand=Plus/Plus
Query 406 TTTGCAACGACAAGACAAGACATCATTTCTTGGATCGGTGAATCCGAAGCCGCTAAATTA 465
||||| ||||| |||| |||||| | ||||||||| |||||||||||||| |||||||||
Sbjct 1 TTTGC-ACGAC-AGACGAGACAT-AATTCTTGGATTGGTGAATCCGAAGCGGCTAAATTA 57
Query 466 TTCCGGTCAGCAATTTTCTCGGTTACGACAGGTTCTAATGATCTAATCAACAATTATTTC 525
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 58 TTCCGGTCAGCAATTTTCTCGGTTACGACCGGTTCAAACGATCTAATCAACAATTATTTC 117
Query 526 ACTCCGGTCATATCAACCCTTCAACGGAAAGT-AGTAGCTCCAGAAGTCTTTGTTGATAC 584
|| ||||| | |||||| || |||||||||| | | |||| |||||||| || |||||
Sbjct 118 ACCCCGGTGGTGTCAACCGTTGAACGGAAAGTCAC-ATCTCCCGAAGTCTTCGTGGATAC 176
Query 585 AATGATCTCAAAATTTCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAAT 644
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 177 AATGATCTCAAGATTCCGATTACAACTCACCAGATTGTACCAATTTGGTGCGAGGAAAAT 236
Query 645 CGTGGTGATTAATATTGGTCCCATCGGTTGTATACCATTCGAGAGAGAGTCTGATCCAGC 704
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
Sbjct 237 CGTGGTGATTAATATTGGTCCCATTGGTTGTATACCGTTCGAGAGAGAAACTGATCCAAC 296
Query 705 CGCTGGAAAT-AACTGTTTGGCCGAACCTAATGAGGTTGGCACAAATGTATAATCTGAAG 763
|||||| || || |||| || ||||| ||||| || |||||||||||||||| | |||
Sbjct 297 GGCTGGAGATGAA-TGTTCGGTTGAACCAAATGAAGT-GGCACAAATGTATAATATCAAG 354
Query 764 CTGAAAACACTCGTAGAAGAGTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTATGGT 823
|| ||||| || ||||| || ||||||||||||||||||||||||||||||||||| | |
Sbjct 355 CTTAAAACCCTAGTAGAGGATTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTACGCT 414
Query 824 GACGTTTTTCGCATTGTTGATGATATTATACAAAATTATTCATCTTACGGTTTTGAGAGT 883
|| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 415 GATGTTTTTCGCATTGTTTATGATATCCTACAAAATTATTCATCTTACGGTTTTGAAAGT 474
Query 884 GAGAAGATTCCTTGTTGTTCGTTAGTTGGGAAAGTAGGTGGGCTGATTCCATGTGGTCCA 943
||||||||||| |||||||| ||| |||| |||||||||||||| |||||||||||||||
Sbjct 475 GAGAAGATTCCGTGTTGTTCATTACTTGGAAAAGTAGGTGGGCTTATTCCATGTGGTCCA 534
Query 944 CCTTCAAAAGTATGTATGGACCGTTCCAAATATGTATTTTGGGATCCTTACCATCC 999
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 535 TCTTCAAAAGTATGTATGGATCGTTCCAAATATGTGTTTTGGGATCCTTACCATCC 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5