BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16260.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329886 jgi|Araly1|329886|fgenesh1_pm.C_scaffold_7002113 1620 0.0
> Ahg329886 jgi|Araly1|329886|fgenesh1_pm.C_scaffold_7002113
Length=1032
Score = 1620 bits (877), Expect = 0.0
Identities = 984/1036 (95%), Gaps = 5/1036 (0%)
Strand=Plus/Plus
Query 112 ATGACCACGTTATTCCTCCTTATTGCTCTATTCATCACAACCATCCTCAACCCAACAAGT 171
|||||| | ||||| ||||||||||||| || |||||||||||||||| |||||||||
Sbjct 1 ATGACCCCATTATTTATCCTTATTGCTCT-TT--TCACAACCATCCTCAATCCAACAAGT 57
Query 172 GGAGAATCAGTAGGTGTATGCTATGGAATGATGGGGAACAACCTTCCTTCTCAATCAGAC 231
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 58 GGAGAACCAGTAGGTGTATGCTATGGAATGATGGGAAACAACCTTCCTTCTCAATCAGAC 117
Query 232 ACAATCGCTCTCTTTAGACAAAACAACATCCGACGTGTTAGACTCTACGATCCAAACCAA 291
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 118 ACAATCGCTCTCTTCAGACAAAACAACATCCGGCGTGTTAGACTCTACGACCCAAACCAA 177
Query 292 GCCGCTTTAAACGCTCTTAGAAACACGGGTATCGAAGTCATCATCGGCGTTCCAAACACC 351
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||
Sbjct 178 GCCGCTTTAAACGCTCTTAAAAACACCGGTATCGAAGTCATCATCGGCGTTCCAAACTCC 237
Query 352 GATCTTCGTTCACTCACTAACCCTTCTTCCGCTAGATCATGGCTCCAAAACAACGTCCTC 411
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 GAGCTTCGTTCACTCACTAACCCTTCTTCCGCCAGATCATGGCTCCAAAACAACGTCCTT 297
Query 412 AACTATTACCCCGCCGTTAGCTTCAAGTACATCGCCGTAGGTAACGAAGTATCTCCGTCG 471
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 298 AACTATTACCCTGCCGTTAGCTTCAAGTACATCGCCGTCGGTAACGAAGTATCTCCATCG 357
Query 472 AACGGCGGTGATGTTGTGCTCCCTGCCATGCGTAACGTTTACGATGCTCTAAGAGGTGCA 531
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 AACGGCGGCGATGTTGTGCTCCCTGCCATGCGTAATGTTTACGATGCTCTAAGAGGTGCA 417
Query 532 AATCTTCAAGATCGTATTAAAGTTTCTACCGCCATTGATATGACTTTGATTGGAAACTCT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AATCTTCAAGATCGTATTAAAGTTTCTACCGCCATTGATATGACTTTGATTGGAAACTCT 477
Query 592 TTCCCTCCTTCCTCCGGAGAGTTTCGTGGTGACGTTA-GATGGTATATCGATCCCGTCAT 650
|||||||||||||||||||||||||| |||||||||| | ||||||||||||||| ||||
Sbjct 478 TTCCCTCCTTCCTCCGGAGAGTTTCGAGGTGACGTTAAG-TGGTATATCGATCCCATCAT 536
Query 651 CGGGTTTCTTACGAGTACGAACTCAGCGTTACTAGCCAACATCTATCCTTACTTCAGCTA 710
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGGGTTTCTTACGAGTACCAACTCAGCGTTACTAGCCAACATCTATCCTTACTTCAGCTA 596
Query 711 CGTTGACAATCCACGTGACATATCTCTCTCTTACGCTCTCTTCACTTCTCCTTCCGTCGT 770
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 CGTCGACAATCCACGAGACATATCTCTCTCTTACGCTCTCTTCACTTCTCCTTCTGTCGT 656
Query 771 CGTATGGGACGGCTCTCGTGGCTACCAAAACCTCTTTGACGCTTTACTTGACGTTGTTTA 830
||| ||||| |||||||| ||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 657 CGTCTGGGATGGCTCTCGCGGCTACCAAAACCTCTTCGACGCCTTGCTTGACGTTATTTA 716
Query 831 CTCTGCCGTTGAACGCTCAGGCGGTGGATCTCTCCCAGTGGTTGTTTCCGAGAGCGGATG 890
||| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 717 CTCCGCCGTCGAACGATCAGGTGGAGGATCTCTCCCAGTGGTTGTTTCCGAGAGCGGATG 776
Query 891 GCCTTCTAACGGTGGAAACGCCGCGAGTTTCGATAACGCGCGAGCTTTTTACACGAATCT 950
||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||
Sbjct 777 GCCTTCTAACGGTGGAAACGCGGCGAGTTTCGATAACGCTCGAGCGTATTACACGAATCT 836
Query 951 TGCGTCGCGTGTGAGAGAGAACAGAGGAACACCGAAGAGACCTGGAAGAGGAGTGGAAAC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGCGTCGCGTGTGAGAGAGAACAGAGGAACACCGAAGAGACCTGGAAGAGGAGTGGAAAC 896
Query 1011 GTATTTGTTCGCTATGTTTGATGAGAATCAAAAGAGTCCTGAGATCGAGAAGAATTTTGG 1070
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 897 GTATTTGTTCGCTATGTTTGATGAGAATCAGAAGAGTCCTGAGATTGAGAAGAATTTTGG 956
Query 1071 TTTGTTTTTTCCTAATAAACAACCAAAATTTCCGATCACATTCTCTGCCGCGAGAGACGG 1130
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 957 TTTGTTTTTTCCTAATAAACAACCAAAATTTCCGATCACATTCTCCGCCGCGAGAGAGGG 1016
Query 1131 TACGGCGGTTGAGTGA 1146
||||||||||||||||
Sbjct 1017 TACGGCGGTTGAGTGA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5