BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16265.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493259 jgi|Araly1|493259|fgenesh2_kg.7__2692__AT4G16265.1 876 0.0
Ahg318462 jgi|Araly1|318462|fgenesh1_pm.C_scaffold_3001478 405 2e-112
Ahg946585 jgi|Araly1|946585|scaffold_702814.1 147 1e-34
> Ahg493259 jgi|Araly1|493259|fgenesh2_kg.7__2692__AT4G16265.1
Length=598
Score = 876 bits (474), Expect = 0.0
Identities = 537/567 (95%), Gaps = 6/567 (1%)
Strand=Plus/Plus
Query 2 CTCTCTCATGTCCGAGTGAACAAATCCCGCCAAAGATAC-GAAGAGACTGATTGTGAAAT 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 CTCTCTCATGTCCGAGTGAACAAATCCCGCCAAAGATACTG-AGAGACTGATTGTGAAAT 59
Query 61 CAAAGAAGCATTCAAAAGCTCGTTATCT----AAAGATTCTGCGAAGATGAGTACTATGA 116
|||||||| | ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 60 CAAAGAAGTACTCAAAAGCTCGTTATATAAAGAAAGATTCTGCGAAGATGAGTACTATGA 119
Query 117 AATTTTGTCGCGAATGTAATAACATTCTATATCCCAAGGAAGACAAGGAGCAATCAATCC 176
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 AATTTTGTCGTGAATGTAATAACATTCTATATCCTAAGGAAGACAAGGAGCAATCAATCC 179
Query 177 TCCTCTATGCGTGCCGTAATTGTGATCACCAGGAAGCAGCAGATAACAATTGTGTTTACA 236
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 180 TCCTCTATGCGTGTCGTAATTGTGATCACCAGGAAGCAGCGGATAACAACTGTGTTTACA 239
Query 237 GAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAGATCCTATCTGACGTTGCTTCCG 296
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 240 GAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAAATCCTATCCGACGTTGCTTCTG 299
Query 297 ACCCAACTCTTCCACGTACCAAGGCTGTGCGATGCGCCAAGTGTCAACACGGTGAAGCTG 356
||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||
Sbjct 300 ACCCAACTCTTCCACGTACCAAGGCAGTGCGGTGTGCCAAGTGTCAACACGGCGAAGCTG 359
Query 357 TCTTCTTCCAGGCCACGGCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCA 416
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTCTTCCAGGCCACTGCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCA 419
Query 417 ACCCGAACTGTAGTCACCGTTGGAGAGAATAGATTGATAGAAGACTACATTTTTCAAATG 476
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 ACCCGAACTGTAGTCACCGTTGGAGAGAATAGAATGATAGAAGACTACATTTTTCAAATG 479
Query 477 TAACGTGTATTTGTGTTCCGCTTTATGAGTTTTATACAATTCAATTTGGAGTTTTCTGTG 536
|||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 480 TAACGTGTATCTGAGTTCCTCTTTATGAGTTTCATACAATTCAATTTGGAGTTTTCTGTG 539
Query 537 TAAAAATATGAATACTATGAGACTGTT 563
||||||||||||||||| | || ||||
Sbjct 540 TAAAAATATGAATACTACGGGAGTGTT 566
> Ahg318462 jgi|Araly1|318462|fgenesh1_pm.C_scaffold_3001478
Length=345
Score = 405 bits (219), Expect = 2e-112
Identities = 306/348 (88%), Gaps = 6/348 (2%)
Strand=Plus/Plus
Query 104 ATGAGTACTATGAAATTTTGTCGCGAATGTAATAACATTCTATATCCCAAGGAAGACAAG 163
|||||||||||||||||||| || |||||||| |||||||| ||||| ||||| ||||||
Sbjct 1 ATGAGTACTATGAAATTTTGCCGTGAATGTAACAACATTCTGTATCCTAAGGAGGACAAG 60
Query 164 GAGCAATCA-ATCCTCCTCTATGCGTGCCGTAATTGTGATCACCAGGAAGCAGCAGATAA 222
|||| | | ||||||||||| || ||||||||||||||||||||||||| ||| |||||
Sbjct 61 GAGC-AGAAGATCCTCCTCTACGCTTGCCGTAATTGTGATCACCAGGAAGTAGCTGATAA 119
Query 223 CAATTGTGTTTACAGAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAGATCCTATC 282
|| ||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 120 CAGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAACTCAAATCCTATC 179
Query 283 TGACGTTGCTTCCGACCCAACTCTTCCACGTACCAAGGCTGTGCGATGCGCCAAGTGTCA 342
|||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 180 TGACGTCGCTTCTGACCCAACTCTTCCCCGAACCAAGGCTGTGCGTTGCGCTAAGTGTCA 239
Query 343 ACACGGTGAAGCTGTCTTCTTCCAGGCCACGGCTAGAGGCGAAGAAGGAATGACTCTGTT 402
|| | || || |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 240 GCATAGCGAGGCCGTCTTCTTCCAGGCTACGGCTAGAGGCGAAGAAGGAATGACACTGTT 299
Query 403 -TTTCGTTTGCTGCAACCCGAACT-GTAGTCACCGTTGGAGAGAATAG 448
||| || |||||||||||||| | || |||| || ||||||||||||
Sbjct 300 CTTT-GTCTGCTGCAACCCGAA-TAGTGGTCATCGCTGGAGAGAATAG 345
> Ahg946585 jgi|Araly1|946585|scaffold_702814.1
Length=296
Score = 147 bits (79), Expect = 1e-34
Identities = 95/103 (92%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 154 GGAAGACAAGGAGCAATCAATCCTCCTCTATGCGTGCCGTAATTGTGATCACCAGGAAGC 213
||||||||||||||| || || || ||||| || ||||||||||||||||||||||||||
Sbjct 24 GGAAGACAAGGAGCAGTCGATTCTACTCTACGCATGCCGTAATTGTGATCACCAGGAAGC 83
Query 214 AGCAGATAACAATTGTGTTTACAGAAACGAGGTTCATCACTCT 256
||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 84 AGCGGATAACAACTGTGTTTACAGAAACGAGGTTCATCACTCT 126
Score = 139 bits (75), Expect = 2e-32
Identities = 88/94 (94%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 374 GCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCAACCCGAACTGTAGTCAC 433
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 202 GCTAAAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTACAACCCGAACTGTAGTCAC 261
Query 434 CGTTGGAGAGAATAGAT-TGATAGAAGACTACAT 466
|||||||||||||||| | |||||||| |||||
Sbjct 262 CGTTGGAGAGAATAGAACT-ATAGAAGATTACAT 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5