BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16270.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946641 jgi|Araly1|946641|scaffold_702870.1 1764 0.0
> Ahg946641 jgi|Araly1|946641|scaffold_702870.1
Length=1129
Score = 1764 bits (955), Expect = 0.0
Identities = 1063/1116 (95%), Gaps = 4/1116 (0%)
Strand=Plus/Plus
Query 6 AGTACCAACTCCATTGAATGTTAAAACTCAGAAGAAAGTGGAGTGATCATATAACGACAA 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGTACCAACTCCATTGAATGTTAAAACTCAGAAGAAAGTGGAGTGATCATATAACGACAA 63
Query 66 TGAAGAATCTCTTTAACTTGTTCCTTATGTTTTTCTTTGCAATGCCAATTCTTTCACTCT 125
||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||
Sbjct 64 TGAAGAATCTCTTTAACTTGTTCCTTATGCTTTTCGCTGCAATGCCAATTCTCTCATTCT 123
Query 126 CCGAGAATCCAACCAATTTCAGCGAGAGTTGCGAAGACGGGAGTGGAGAAACCGGTTCAA 185
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CCGACAATCCAACCAACTTCAGCGAGAGTTGCGAAGACGGGAGTGGAGAAACCGGTTCAA 183
Query 186 GCTTTGGCATAGGGTTCGATTTGGTTCTTGATTTTGGTTTATACCGGAATAGCTGCCCCG 245
| ||||| |||||||||| ||||||||||||||| ||||| |||||||||||||| || |
Sbjct 184 GTTTTGGTATAGGGTTCGGTTTGGTTCTTGATTTCGGTTTGTACCGGAATAGCTGTCCGG 243
Query 246 AAGCAGAGTCTATCGTCTACTCGTGGGTGGAAACCACGGTGTTAGAGGATCCAAGAATGG 305
|||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 244 AAGCAGAGTCCATAGTCTACTCGTGGGTCGAAACCACGGTGTTACAGGATCCAAGAATGG 303
Query 306 CTGCTTCTCTTCTCCGTCTTCATTTCCACGACTGTTTTGTCAATGGATGTGATGCTTCGG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTGCTTCTCTTCTCCGTCTTCATTTCCACGACTGTTTTGTCAATGGATGTGATGCTTCGG 363
Query 366 TGTTGTTAGATGACACAGAAGGACTGGTTGGTGAAAAAACGGCGCCTCCTAATCTAAATT 425
||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 364 TGTTGTTGGACGACACGGAAGGACTGGTTGGTGAAAAAACTGCGCCTCCTAATCTAAATT 423
Query 426 CTCTACGAGGGTTCGAAGTGATTGATTCGATAAAGTCTGATATTGAATCTGTATGTCCAG 485
|||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 424 CTCTCCGAGGGTTCGAAGTAATAGATTCGATAAAGTCTGATCTTGAATCTGTATGTCCAG 483
Query 486 AGACCGTCTCATGCGCAGACATTCTTGCCATGGCTGCTAGAGATTCAGTCGTTGTGTCGG 545
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 484 AAACCGTCTCATGCGCAGACATTCTTGCCATGGCCGCTAGAGATTCAGTCGTTGTGTCGG 543
Query 546 GTGGACCAAGGTGGGAGGTGGAAGTAGGAAGAAAAGACAGTAGAACAGCAAGCAAACAGG 605
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 544 GTGGACCAAGCTGGGAGGTGGAAGTAGGAAGAAAAGACAGTAGAACAGCGAGCAAACAGG 603
Query 606 CAGCAACAAATGGCTTACCCTCACCAAACTCAACCGTATCAACTCTCATCTCTACTTTCC 665
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 604 CAGCAACAAATGGCTTACCCTCACCAAACTCAACCGTACCAACTCTCATATCTACCTTCC 663
Query 666 AGAATCTTGGCCTTTCACAAACCGACATGGTCGCTCTTTCCGGTGGACATACATTGGGAA 725
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AAAATCTTGGCCTTTCACAAACCGACATGGTCGCTCTTTCCGGTGGACATACATTGGGAA 723
Query 726 AGGCACGGTGCACTTCGTTTACAGCTCGGTTGCAGCCACTGCAAACTGGACAACCAGCTA 785
||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 724 AGGCAAGGTGCAGTTCGTTTACAGCTCGGTTGCAGCCACTGCAAACTGGACAACCGGCTA 783
Query 786 ACCACGGAGACAACCTTGAGTTCCTCGAGTCACTGCAACAGTTATGCTCGACTGTTGGGC 845
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||
Sbjct 784 ACCATGGAGACAACCTTGAGTTCCTCGAGTCACTACAACAGTTGTGCTCGACCGT-GGGC 842
Query 846 CC-AGTGTAGGTATCACTCAGCTTGACTTGGTGACTCCATCAACATTTGACAACCAGTAC 904
|| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 843 CCTACTGTCGGTATCACTCAGCTTGACTTGGTGACCCCATCAACATTTGACAACCAGTAC 902
Query 905 TATGTAAACCTCCTCTCGGGTGAGGGATTGCTTCCATCAGACCAGGCTTTAGCGGTTCAA 964
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 903 TATGTAAACCTCCTCTCAGGTGAGGGATTGCTTCCATCAGACCAAGCTTTAGCGGTTCAA 962
Query 965 GACCCAGGGACAAGGGCGATTGTTGAGACCTACGCAACAGATCAGTCGGTTTTCTTTGAG 1024
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 963 GACCCAGGGACAAGGGCGATTGTTGAGACCTACGCAGCAGATCAGTCGGTTTTCTTTGAG 1022
Query 1025 GATTTTAAGAACGCTATGGTTAAAATGGGAGGGAT-ACCCGGTGGTAGTAATAGCGAGAT 1083
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1023 GATTTTAAGAACGCTATGGTTAAAATGGGAGGGATTACC-GGTGGTAGTAATAGCGAGAT 1081
Query 1084 TAGGAAGAATTGTAGAATGATTAACTAAAAATAAAA 1119
||||| ||| ||||||||||||||||||||||||||
Sbjct 1082 TAGGAGGAACTGTAGAATGATTAACTAAAAATAAAA 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5