BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16280.2 Length=3107 Score E Sequences producing significant alignments: (Bits) Value Ahg493257 jgi|Araly1|493257|fgenesh2_kg.7__2690__AT4G16280.3 2290 0.0 > Ahg493257 jgi|Araly1|493257|fgenesh2_kg.7__2690__AT4G16280.3 Length=2136 Score = 2290 bits (1240), Expect = 0.0 Identities = 1504/1627 (92%), Gaps = 35/1627 (2%) Strand=Plus/Plus Query 414 ATGAATGGTCCCCCAGATAGAGTAGATTTTAAGCCTATGGGTCCTCACCATGGTGGAAGT 473 ||||||||||| |||||||||||||||||| |||| ||| |||||| ||||||||||| Sbjct 1 ATGAATGGTCCTCCAGATAGAGTAGATTTTCAGCCGATGCGTCCTCGGAATGGTGGAAGT 60 Query 474 TTTCGGCCTATGGGGTTTGCCTACGATGATGGTTTTCGTCCAATGGGTCCTAACGGTGGT 533 |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 TTTCGGCCTATGGGTTTTGCCTACGATGATGGTTTTCGTCCGATGGGTCCTAACGGTGGC 120 Query 534 GTGGGAGGAGAAGGGACACGGTCAATTGTTGGAGCT--CGGT-----A-TA--A------ 577 || |||||||||||||| |||||||||||||||||| |||| | | | Sbjct 121 GTAGGAGGAGAAGGGACGCGGTCAATTGTTGGAGCTGGCGGTGGCAGAGGAGGATTTCGG 180 Query 578 -CT-A---TCCCGCGAAGTATCCTCCTTCAGAGAGTCCAGACAGGAGGAGATTTATCGGT 632 || | |||||||||| ||| |||||||||||||||||| ||||||||||||||||| Sbjct 181 TCTAACGGACCCGCGAAGTTTCCGCCTTCAGAGAGTCCAGACGGGAGGAGATTTATCGGT 240 Query 633 AAAGCAATGGAGTCTGATTATTCTGTAAGACCGACTACACCGCCGGTCCAGCAGCCTCTT 692 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 241 AAAGCAATGGAGTCTGATTATTCTGTAAGGCCGACTACACCGCCGGTCCAACAGCCTCTT 300 Query 693 TCCGGTCAGAAAAGAGGGTATCCTATCTCAGACCATGGCAGCTTTACTGGAACTGATGTC 752 || ||||||||| |||||||||||| |||||| |||||||||| ||||||| ||||||| Sbjct 301 TCTGGTCAGAAACGAGGGTATCCTAGCTCAGATCATGGCAGCTATACTGGAGCTGATGTT 360 Query 753 TCTGATCGTAGCAGTACAGTCAAGCTTTTTGTTGGATCTGTACCAAGGACAGCTACAGAA 812 ||||||| |||||||| ||||||||||||||||| || |||||||||||||||| |||| Sbjct 361 TCTGATCATAGCAGTATTGTCAAGCTTTTTGTTGGCTCCGTACCAAGGACAGCTATAGAA 420 Query 813 GAAGAAATCCGTCCCTATTTCGAACAGCATGGAAATGTTCTGGAGGTTGCTCTGATCAAG 872 |||||| | ||||||| ||| ||| |||||||||||||||||||||||||| |||||||| Sbjct 421 GAAGAAGTTCGTCCCTTTTTTGAAAAGCATGGAAATGTTCTGGAGGTTGCTTTGATCAAG 480 Query 873 GACAAGAGAACTGGACAGCAGCAAGGCTGTTGTTTTGTAAAATATGCAACTTCGAAAGAT 932 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 481 GACAAGAGAACTGGACAGCAGCAAGGCTGTTGTTTTGTAAAGTATGCAACTTCTAAAGAT 540 Query 933 GCGGATAGAGCCATCAGAGCACTGCACAATCAGATCACTCTTCCTGGGGGAACTGGTCCT 992 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCGGATAGAGCCATTAGAGCACTGCACAATCAGATCACTCTTCCTGGGGGAACTGGTCCT 600 Query 993 GTTCAAGTTCGATATGCTGACGGGGAGAGAGAACGCATAGGCACCCTAGAGTTTAAGCTT 1052 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 601 GTTCAAGTTCGATATGCTGATGGGGAGAGAGAACGCATAGGCACGCTAGAGTTTAAGCTT 660 Query 1053 TTTGTTGGTTCACTAAACAAGCAAGCCACTGAAAAAGAAGTTGAGGAGATCTTTTTACAA 1112 || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 661 TTCGTTGGTTCACTAAACAAGCAAGCCACTGAAAAAGAAGTTGAAGAGATATTTTTACAA 720 Query 1113 TTTGGTCATGTGGAAGATGTCTATCTCATGCGGGATGAATATAGACAGAGTCGTGGATGT 1172 ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 721 TTTGGTCGCGTAGAAGATGTCTATCTCATGCGTGATGAATATAGACAGAGTCGTGGATGC 780 Query 1173 GGGTTTGTTAAATATTCAAGCAAAGAGACGGCAATGGCAGCTATCGATGGTCTCAACGGA 1232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 781 GGGTTTGTTAAATATTCAAGCAAAGAGACGGCAATGGCAGCTATCGATGGTCTCAATGGA 840 Query 1233 ACTTATACCATGAGAGGTTGCAATCAGCCATTGATTGTTCGGTTTGCTGAGCCAAAGAGG 1292 |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct 841 ACTTATACCATGAGAGGTTGCAATCAACCATTGATTGTTCGATTTGCTGATCCAAAGAGA 900 Query 1293 CCTAAACCTGGCGAGTCAAGGGAAATGGCACCTCCTGTTGGACTTGGTTCAGGGCCTCGT 1352 ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 901 CCTAAACCTGGCGAGTCAAGGGACATGACAGCTCCTGTTGGACTTGGTTCAGGGCCTCGT 960 Query 1353 TTTCAAGCTTCAGGACCAAGGCCTACCTCTAACTTTGGTGACTCTAGTGGGGATGTAAGC 1412 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TTTCAAGTTTCAGGACAAAGGCCTACCTCTAACTTTGGTGACTCTAGTGGGGATGTAAGC 1020 Query 1413 CACACAAATCCTTGGCGTCCAGCTACTTCACGAAACGTAGGCCCACCTAGTAACACTGGG 1472 ||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||||| Sbjct 1021 CACACAAATCCTTGGCGTCCAGCGAATTCACAAAACGTAGGTCCACCTAGTAACACTGGG 1080 Query 1473 ATCCGTGGTGCCGGTAGTGACTTTTCCCCTAAACCAGGTCAAGCAACATTGCCTTCAAAT 1532 |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1081 ATCCGTGGTGCCGGAACTGACTTTTCCCCTAGACCAGGTCAAGCAACATTGCCTTCAAAT 1140 Query 1533 CAGGGTGGCCCGTTAGGTGGTTATGGTGTTCCTCCCCTTAACCCTCTCCCAGTCCCTGGA 1592 |||||||||| ||| |||||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 1141 CAGGGTGGCCTGTTTGGTGGTTATGGTGTTCCTCCCCTTAATCCTCTTCCAGTCTCTGGA 1200 Query 1593 GTTTCATCTTCTGCCACATTGCAACAGCAAAATCGGGCAGCTGGCCAGCATATAACACCA 1652 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1201 GTTTCATCTTCTGCCAAATTGCAACAGCAAAATCGGGCAGCTGGCCAGCAAATATCACCA 1260 Query 1653 TTaaaaaaaCCTCTTCACAGTCCACAGGGTCTCCCTCTCCCCCTCCGTCCGCAAACTAAT 1712 ||||||||||||||||||||||||||||||||||| | | | ||||| | | | | Sbjct 1261 TTAAAAAAACCTCTTCACAGTCCACAGGGTCTCCC-C-C----TACGTCC--A--C-A-T 1308 Query 1713 TTCCCTGGGGCCCAGGCACCCTTGCAGAATCCTTATGCTTATAGCAGCCAGTTGCCTACC 1772 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1309 TTCCCTGGGGCCCAGGCACCCTTGCAGAATCCTTATACTTATAGCAGCCAGTTGCCTTCC 1368 Query 1773 TCTCAGCTGCCACCACAGCAAAACATCAGTCGTGCAACTGCTCCTCAAACTCCTTTGAAC 1832 ||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||||| Sbjct 1369 TCTCAGCTGCCGCCACAGCAAAACGTCACTCGTGCAACTGCTCCTCAGACTCCTTTGAAC 1428 Query 1833 ATTAATCTACGGCCAACA-ACTGTGTCTTCTGCAACTGTTCAATTTCCCCCTCGTTCCCA 1891 |||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||||| Sbjct 1429 ATTAATCTACGGCCAACACA-TGTGTCTTCTGCATCTGATCAATTTCCCCCTCGTTCCCA 1487 Query 1892 GCAGCAACCGCTACAAAAGATGCAACATCCTCCTTCTGAGCTAGCTCAGCTCTTGTCGCA 1951 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1488 GCAGCAACCGCTACAAAAGATGCAACATCCTCCTTCTGAGCTAGCTCAGCTCTTGTCACA 1547 Query 1952 GCAAACTCAGAGTCTACAAGCAACATTCCAATCGTCTCAGCAAGCAATTTCTCAGCTGCA 2011 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1548 GCAAACTCAGAGTCTACAAGCAACACTCCAATCGTCTCAGCAAGCAATATCTCAGCTGCA 1607 Query 2012 GCAGCAG 2018 ||||||| Sbjct 1608 GCAGCAG 1614 Score = 712 bits (385), Expect = 0.0 Identities = 461/496 (93%), Gaps = 11/496 (2%) Strand=Plus/Plus Query 2170 TAAGTCAGAGCGTAGG-TTCTGTCAAATGTACCTGGACCGAGCATACCTCGCCTGATGGA 2228 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1645 TAAGTCAGAGCGT-GGTTTCTGTCAAATGTACCTGGACCGAGCATACCTCGCCTGATGGA 1703 Query 2229 TTTAAATATTATTACAATGGTCTAACGGGTGAAAGCAAGTGGGAAAAACCTGAGGAAATG 2288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1704 TTTAAATATTATTACAATGGTCTAACGGGTGAAAGCAAGTGGGAAAAACCTGAGGAAATG 1763 Query 2289 ATAGTGTTCGAACGAGAGCAACAGAAACAGCAACAACATCAAGAGAAGCCAACTATACAG 2348 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1764 ATAGTGTTCGAACGAGAGCAACAGCAACAGCAACAACATCAAGAAAAGCCAACTATACAG 1823 Query 2349 CAGTCCCAGACCCAATTACAGCCGTTGCAGCAACAACCACAACAAGTTCAGCAGCAATAT 2408 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1824 CAGCCCCAGACCCAATTACAGCCGTTGCAGCAACAACCACAACAAGTTCACCAGCAATAT 1883 Query 2409 CAGGGCCAGCAATTACAGCAGCCGTTTTATTCTTCACTGTATCCAACTCCAGGGGCCAGC 2468 || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 1884 CAAGGCCAGCAATTACAGCATCCGTTTTATTCTTCACTGTATCCAACTCCAGGGTCCAGC 1943 Query 2469 CATAATACTCAGTATCCATCATTGCCAGTAGGTCAAAATAGCCAGTTTCCTATGTCAGGA 2528 |||||| |||||||||||||||||||||| |||||||| |||||| | ||| || | | Sbjct 1944 CATAATGCTCAGTATCCATCATTGCCAGTTGGTCAAAACAGCCAGGTA--TATATCTG-A 2000 Query 2529 A--T-TGGTCAGAATGCTCAGGATTATGCTCGGACACATATACCCGTGG-G--AGCTGCT 2582 | | ||| | | | |||||| ||||||||||||||||||||||||| | ||||||| Sbjct 2001 ACCTGTGGACTTATTTTTCAGGACTATGCTCGGACACATATACCCGTGGTGGGAGCTGCT 2060 Query 2583 TCAATGAATGATATATCAAGAACTCAACAGAGCCGTCAATCTCCCCAAGAACTCATGTGG 2642 | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2061 TTAATGAATGATCTATCAAGAACTCAACAGAGACGTCAATCTCCCCAAGAACTCATGTGG 2120 Query 2643 AAGAATAAAGCTTGAG 2658 |||||||||||||||| Sbjct 2121 AAGAATAAAGCTTGAG 2136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117356044845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5