BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16280.2
Length=3107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493257 jgi|Araly1|493257|fgenesh2_kg.7__2690__AT4G16280.3 2290 0.0
> Ahg493257 jgi|Araly1|493257|fgenesh2_kg.7__2690__AT4G16280.3
Length=2136
Score = 2290 bits (1240), Expect = 0.0
Identities = 1504/1627 (92%), Gaps = 35/1627 (2%)
Strand=Plus/Plus
Query 414 ATGAATGGTCCCCCAGATAGAGTAGATTTTAAGCCTATGGGTCCTCACCATGGTGGAAGT 473
||||||||||| |||||||||||||||||| |||| ||| |||||| |||||||||||
Sbjct 1 ATGAATGGTCCTCCAGATAGAGTAGATTTTCAGCCGATGCGTCCTCGGAATGGTGGAAGT 60
Query 474 TTTCGGCCTATGGGGTTTGCCTACGATGATGGTTTTCGTCCAATGGGTCCTAACGGTGGT 533
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TTTCGGCCTATGGGTTTTGCCTACGATGATGGTTTTCGTCCGATGGGTCCTAACGGTGGC 120
Query 534 GTGGGAGGAGAAGGGACACGGTCAATTGTTGGAGCT--CGGT-----A-TA--A------ 577
|| |||||||||||||| |||||||||||||||||| |||| | | |
Sbjct 121 GTAGGAGGAGAAGGGACGCGGTCAATTGTTGGAGCTGGCGGTGGCAGAGGAGGATTTCGG 180
Query 578 -CT-A---TCCCGCGAAGTATCCTCCTTCAGAGAGTCCAGACAGGAGGAGATTTATCGGT 632
|| | |||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 181 TCTAACGGACCCGCGAAGTTTCCGCCTTCAGAGAGTCCAGACGGGAGGAGATTTATCGGT 240
Query 633 AAAGCAATGGAGTCTGATTATTCTGTAAGACCGACTACACCGCCGGTCCAGCAGCCTCTT 692
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 AAAGCAATGGAGTCTGATTATTCTGTAAGGCCGACTACACCGCCGGTCCAACAGCCTCTT 300
Query 693 TCCGGTCAGAAAAGAGGGTATCCTATCTCAGACCATGGCAGCTTTACTGGAACTGATGTC 752
|| ||||||||| |||||||||||| |||||| |||||||||| ||||||| |||||||
Sbjct 301 TCTGGTCAGAAACGAGGGTATCCTAGCTCAGATCATGGCAGCTATACTGGAGCTGATGTT 360
Query 753 TCTGATCGTAGCAGTACAGTCAAGCTTTTTGTTGGATCTGTACCAAGGACAGCTACAGAA 812
||||||| |||||||| ||||||||||||||||| || |||||||||||||||| ||||
Sbjct 361 TCTGATCATAGCAGTATTGTCAAGCTTTTTGTTGGCTCCGTACCAAGGACAGCTATAGAA 420
Query 813 GAAGAAATCCGTCCCTATTTCGAACAGCATGGAAATGTTCTGGAGGTTGCTCTGATCAAG 872
|||||| | ||||||| ||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 421 GAAGAAGTTCGTCCCTTTTTTGAAAAGCATGGAAATGTTCTGGAGGTTGCTTTGATCAAG 480
Query 873 GACAAGAGAACTGGACAGCAGCAAGGCTGTTGTTTTGTAAAATATGCAACTTCGAAAGAT 932
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 481 GACAAGAGAACTGGACAGCAGCAAGGCTGTTGTTTTGTAAAGTATGCAACTTCTAAAGAT 540
Query 933 GCGGATAGAGCCATCAGAGCACTGCACAATCAGATCACTCTTCCTGGGGGAACTGGTCCT 992
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCGGATAGAGCCATTAGAGCACTGCACAATCAGATCACTCTTCCTGGGGGAACTGGTCCT 600
Query 993 GTTCAAGTTCGATATGCTGACGGGGAGAGAGAACGCATAGGCACCCTAGAGTTTAAGCTT 1052
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GTTCAAGTTCGATATGCTGATGGGGAGAGAGAACGCATAGGCACGCTAGAGTTTAAGCTT 660
Query 1053 TTTGTTGGTTCACTAAACAAGCAAGCCACTGAAAAAGAAGTTGAGGAGATCTTTTTACAA 1112
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 661 TTCGTTGGTTCACTAAACAAGCAAGCCACTGAAAAAGAAGTTGAAGAGATATTTTTACAA 720
Query 1113 TTTGGTCATGTGGAAGATGTCTATCTCATGCGGGATGAATATAGACAGAGTCGTGGATGT 1172
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 TTTGGTCGCGTAGAAGATGTCTATCTCATGCGTGATGAATATAGACAGAGTCGTGGATGC 780
Query 1173 GGGTTTGTTAAATATTCAAGCAAAGAGACGGCAATGGCAGCTATCGATGGTCTCAACGGA 1232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GGGTTTGTTAAATATTCAAGCAAAGAGACGGCAATGGCAGCTATCGATGGTCTCAATGGA 840
Query 1233 ACTTATACCATGAGAGGTTGCAATCAGCCATTGATTGTTCGGTTTGCTGAGCCAAAGAGG 1292
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 841 ACTTATACCATGAGAGGTTGCAATCAACCATTGATTGTTCGATTTGCTGATCCAAAGAGA 900
Query 1293 CCTAAACCTGGCGAGTCAAGGGAAATGGCACCTCCTGTTGGACTTGGTTCAGGGCCTCGT 1352
||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 901 CCTAAACCTGGCGAGTCAAGGGACATGACAGCTCCTGTTGGACTTGGTTCAGGGCCTCGT 960
Query 1353 TTTCAAGCTTCAGGACCAAGGCCTACCTCTAACTTTGGTGACTCTAGTGGGGATGTAAGC 1412
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTTCAAGTTTCAGGACAAAGGCCTACCTCTAACTTTGGTGACTCTAGTGGGGATGTAAGC 1020
Query 1413 CACACAAATCCTTGGCGTCCAGCTACTTCACGAAACGTAGGCCCACCTAGTAACACTGGG 1472
||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||
Sbjct 1021 CACACAAATCCTTGGCGTCCAGCGAATTCACAAAACGTAGGTCCACCTAGTAACACTGGG 1080
Query 1473 ATCCGTGGTGCCGGTAGTGACTTTTCCCCTAAACCAGGTCAAGCAACATTGCCTTCAAAT 1532
|||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1081 ATCCGTGGTGCCGGAACTGACTTTTCCCCTAGACCAGGTCAAGCAACATTGCCTTCAAAT 1140
Query 1533 CAGGGTGGCCCGTTAGGTGGTTATGGTGTTCCTCCCCTTAACCCTCTCCCAGTCCCTGGA 1592
|||||||||| ||| |||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1141 CAGGGTGGCCTGTTTGGTGGTTATGGTGTTCCTCCCCTTAATCCTCTTCCAGTCTCTGGA 1200
Query 1593 GTTTCATCTTCTGCCACATTGCAACAGCAAAATCGGGCAGCTGGCCAGCATATAACACCA 1652
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1201 GTTTCATCTTCTGCCAAATTGCAACAGCAAAATCGGGCAGCTGGCCAGCAAATATCACCA 1260
Query 1653 TTaaaaaaaCCTCTTCACAGTCCACAGGGTCTCCCTCTCCCCCTCCGTCCGCAAACTAAT 1712
||||||||||||||||||||||||||||||||||| | | | ||||| | | | |
Sbjct 1261 TTAAAAAAACCTCTTCACAGTCCACAGGGTCTCCC-C-C----TACGTCC--A--C-A-T 1308
Query 1713 TTCCCTGGGGCCCAGGCACCCTTGCAGAATCCTTATGCTTATAGCAGCCAGTTGCCTACC 1772
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1309 TTCCCTGGGGCCCAGGCACCCTTGCAGAATCCTTATACTTATAGCAGCCAGTTGCCTTCC 1368
Query 1773 TCTCAGCTGCCACCACAGCAAAACATCAGTCGTGCAACTGCTCCTCAAACTCCTTTGAAC 1832
||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 1369 TCTCAGCTGCCGCCACAGCAAAACGTCACTCGTGCAACTGCTCCTCAGACTCCTTTGAAC 1428
Query 1833 ATTAATCTACGGCCAACA-ACTGTGTCTTCTGCAACTGTTCAATTTCCCCCTCGTTCCCA 1891
|||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||
Sbjct 1429 ATTAATCTACGGCCAACACA-TGTGTCTTCTGCATCTGATCAATTTCCCCCTCGTTCCCA 1487
Query 1892 GCAGCAACCGCTACAAAAGATGCAACATCCTCCTTCTGAGCTAGCTCAGCTCTTGTCGCA 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1488 GCAGCAACCGCTACAAAAGATGCAACATCCTCCTTCTGAGCTAGCTCAGCTCTTGTCACA 1547
Query 1952 GCAAACTCAGAGTCTACAAGCAACATTCCAATCGTCTCAGCAAGCAATTTCTCAGCTGCA 2011
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1548 GCAAACTCAGAGTCTACAAGCAACACTCCAATCGTCTCAGCAAGCAATATCTCAGCTGCA 1607
Query 2012 GCAGCAG 2018
|||||||
Sbjct 1608 GCAGCAG 1614
Score = 712 bits (385), Expect = 0.0
Identities = 461/496 (93%), Gaps = 11/496 (2%)
Strand=Plus/Plus
Query 2170 TAAGTCAGAGCGTAGG-TTCTGTCAAATGTACCTGGACCGAGCATACCTCGCCTGATGGA 2228
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 TAAGTCAGAGCGT-GGTTTCTGTCAAATGTACCTGGACCGAGCATACCTCGCCTGATGGA 1703
Query 2229 TTTAAATATTATTACAATGGTCTAACGGGTGAAAGCAAGTGGGAAAAACCTGAGGAAATG 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 TTTAAATATTATTACAATGGTCTAACGGGTGAAAGCAAGTGGGAAAAACCTGAGGAAATG 1763
Query 2289 ATAGTGTTCGAACGAGAGCAACAGAAACAGCAACAACATCAAGAGAAGCCAACTATACAG 2348
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1764 ATAGTGTTCGAACGAGAGCAACAGCAACAGCAACAACATCAAGAAAAGCCAACTATACAG 1823
Query 2349 CAGTCCCAGACCCAATTACAGCCGTTGCAGCAACAACCACAACAAGTTCAGCAGCAATAT 2408
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1824 CAGCCCCAGACCCAATTACAGCCGTTGCAGCAACAACCACAACAAGTTCACCAGCAATAT 1883
Query 2409 CAGGGCCAGCAATTACAGCAGCCGTTTTATTCTTCACTGTATCCAACTCCAGGGGCCAGC 2468
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1884 CAAGGCCAGCAATTACAGCATCCGTTTTATTCTTCACTGTATCCAACTCCAGGGTCCAGC 1943
Query 2469 CATAATACTCAGTATCCATCATTGCCAGTAGGTCAAAATAGCCAGTTTCCTATGTCAGGA 2528
|||||| |||||||||||||||||||||| |||||||| |||||| | ||| || | |
Sbjct 1944 CATAATGCTCAGTATCCATCATTGCCAGTTGGTCAAAACAGCCAGGTA--TATATCTG-A 2000
Query 2529 A--T-TGGTCAGAATGCTCAGGATTATGCTCGGACACATATACCCGTGG-G--AGCTGCT 2582
| | ||| | | | |||||| ||||||||||||||||||||||||| | |||||||
Sbjct 2001 ACCTGTGGACTTATTTTTCAGGACTATGCTCGGACACATATACCCGTGGTGGGAGCTGCT 2060
Query 2583 TCAATGAATGATATATCAAGAACTCAACAGAGCCGTCAATCTCCCCAAGAACTCATGTGG 2642
| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2061 TTAATGAATGATCTATCAAGAACTCAACAGAGACGTCAATCTCCCCAAGAACTCATGTGG 2120
Query 2643 AAGAATAAAGCTTGAG 2658
||||||||||||||||
Sbjct 2121 AAGAATAAAGCTTGAG 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117356044845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5