BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16295.1
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946639 jgi|Araly1|946639|scaffold_702868.1 688 0.0
Ahg890400 jgi|Araly1|890400|Al_scaffold_0007_2386 688 0.0
> Ahg946639 jgi|Araly1|946639|scaffold_702868.1
Length=501
Score = 688 bits (372), Expect = 0.0
Identities = 430/458 (94%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 1 ATGAATTGCATCAAACAATTTCTCTTGGCAATTTGCTTTTCTCTGGCCCTAACATGTCAA 60
||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 25 ATGAATTGCATCAAACAATTTTTCTTGGCAATTTGCTTTTCTCTAGCCATAACATGTCAA 84
Query 61 GACCATGTCTTAGTCGGCGGCACCACCACGAGAGACATTATAGTCCCGAAGATTTCTGAG 120
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 85 GATCATGTCTTAGTCGGCGGCACCACCACGAGAGACATCATAGTCCCGAAGATTTCTGAG 144
Query 121 TGGCAAGTCACGGTTGTTAACGGTTTGACAACTGGTGAAACTCTTTTCATCCATTGTAAA 180
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 145 TGGCAAGTCACGGTTGTTAACGGTTTGACTACTGGTGAAACTCTTTTTATCCATTGTAAA 204
Query 181 TCTAAAGAAGATGATCTAGGTGAAATTAATCTGAAGTTTAGAAATAGATTTTCTTGGAAC 240
||||| |||||||||||||||||||||| |||||| |||||| |||||||||| |||||
Sbjct 205 TCTAAGGAAGATGATCTAGGTGAAATTAGTCTGAATTTTAGAGATAGATTTTCGTGGAAT 264
Query 241 TTCGGAGAAAATATGCTTCACTCAACttttttttGGTGCTATATGAACAAAGATAATGGT 300
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct 265 TTCGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATGAGCAAAGATGATGGT 324
Query 301 CATATGAATGTAAACGTGTTTTGGGATGATGTTAT-CTTGTTCCATAGATGCGGTTGGAA 359
||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||
Sbjct 325 TATATGAATGTAAAGGTATTTTGGGATGATGTTATTCT-GTTCCATAGATGCGGTTGGAA 383
Query 360 GAATTGCATTTGGACTGCAAAAACTGATGGCCTTTATCTTTGGAATTCAGCGAGCGGTGA 419
||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||
Sbjct 384 GAATTGCATTTGGACCGCAAAATCTGATGGCCTTTATCTTTGGAATTTAGCGAACGGTGA 443
Query 420 AGATGTATTGTCAAGAAAA-TGGGAAGTTGGATGGTGA 456
|||||||||||| ||||| ||||||||||||||||||
Sbjct 444 AGATGTATTGTCG-GAAAAATGGGAAGTTGGATGGTGA 480
> Ahg890400 jgi|Araly1|890400|Al_scaffold_0007_2386
Length=456
Score = 688 bits (372), Expect = 0.0
Identities = 430/458 (94%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 1 ATGAATTGCATCAAACAA-TTTCTCTTGGCAATTTGCTTTTCTCTGGCCCTAACATGTCA 59
||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTGCATCAAA-AAGTTTCTCTTGACAATTTGCTTTTCTCTAGCCCTAACATGTCA 59
Query 60 AGACCATGTCTTAGTCGGCGGCACCACCACGAGAGACATTATAGTCCCGAAGATTTCTGA 119
||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 60 AGATCATGTCTTAGCCGGCGGCACCACCACGAGAGACATCATAGTCCCAAAGATTTCCGA 119
Query 120 GTGGCAAGTCACGGTTGTTAACGGTTTGACAACTGGTGAAACTCTTTTCATCCATTGTAA 179
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 GTGGCAAGTCACGGTTCTTAACGGTTTGACCACTGGTGAAACTCTTTTCATCCATTGTAA 179
Query 180 ATCTAAAGAAGATGATCTAGGTGAAATTAATCTGAAGTTTAGAAATAGATTTTCTTGGAA 239
|||||| |||||||||||||||||||||| | ||||||||||| ||||||||| ||||||
Sbjct 180 ATCTAAGGAAGATGATCTAGGTGAAATTAGTTTGAAGTTTAGAGATAGATTTTTTTGGAA 239
Query 240 CTTCGGAGAAAATATGCTTCACTCAACttttttttGGTGCTATATGAACAAAGATAATGG 299
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct 240 CTTCGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATGCACAAAGATGATGG 299
Query 300 TCATATGAATGTAAACGTGTTTTGGGATGATGTTATCTTGTTCCATAGATGCGGTTGGAA 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 TCATATGAATGTAAACGTGTTTTGGGATGATGTTATTTTGTTTCATAGATGCGGTTGGAA 359
Query 360 GAATTGCATTTGGACTGCAAAAACTGATGGCCTTTATCTTTGGAATTCAGCGAGCGGTGA 419
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 360 GAATTGTATTTGGACCGCAAAAACTGATGGTCTTTATCTTTGGAATTCAGCGAGCGGTCA 419
Query 420 AGATGTATTGTCA-AGAAAATGGGAAGTTGGATGGTGA 456
||||||||||||| ||||| ||| ||||||||||||||
Sbjct 420 AGATGTATTGTCAGAGAAA-TGGAAAGTTGGATGGTGA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16483214448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5