BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16330.2
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355126 jgi|Araly1|355126|fgenesh1_pg.C_scaffold_7002299 1482 0.0
> Ahg355126 jgi|Araly1|355126|fgenesh1_pg.C_scaffold_7002299
Length=1017
Score = 1482 bits (802), Expect = 0.0
Identities = 913/968 (94%), Gaps = 1/968 (0%)
Strand=Plus/Plus
Query 167 GGTTCCTTCTCAGTACATCCAGCCACCGGAAGCTCGACCTAATCTCCCATTACCCCGGCG 226
|||||||||||||||||| ||||||||||||||||||||| |||| | || || ||||||
Sbjct 51 GGTTCCTTCTCAGTACATTCAGCCACCGGAAGCTCGACCTCATCT-CGATAACTCCGGCG 109
Query 227 ATGCAGCTTCGATCCCAACCGTCGATCTCTCGAGCTCCGATTCCGCGAGAGAAGCCATCG 286
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 110 ATGCAGCTTCGATCCCAACCGTCGATCTCTCGAGCTCCGATTCCGCTAGAGAAGCCATCG 169
Query 287 GTGACGCTTGTCGCGACTGGGGAGCCTTCCACGTAATCAACCATGGTGTTCCAATCCATC 346
|||| ||||||||| |||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 170 GTGATGCTTGTCGCAACTGGGGAGCTTTTCACGTAATCAACCATGGCGTTCCAATCCATC 229
Query 347 TCCTTGATCGGATGAGGTCTTTAGGTCTCTCTTTCTTCCAAGACTCTCCCATGGAAGAGA 406
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 230 TACTTGATCGGATGAGATCTTTAGGTCTCTCTTTCTTTCAAGACTCTCCCATGGAAGAGA 289
Query 407 AGCTACGTTACGCCTGCGACTCTACCTCCGCCGCATCTGAAGGTTACGGTAGCCGTATGT 466
|||| || ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||
Sbjct 290 AGCTCCGATACGCTTGCGACTCTACATCCGCCGCGTCGGAAGGTTACGGTAGCCGGATGT 349
Query 467 TGCTTGGTGCTAAAGATGACGTCGTTTTGGATTGGAGAGATTACTTTGATCATCACACGT 526
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGCTCGGTGCTAAAGACGACGTCGTTTTGGATTGGAGAGATTACTTTGATCATCACACGT 409
Query 527 TTCCTCCCTCTCGTCGTAACCCTTCTCATTGGCCGATTCATCCTTCTGACTACAGACAAG 586
|||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 410 TTCCTCTCTCTCGCCGTAACCCTTCTCGTTGGCCGATTCATCCTCCTGACTACAGACAAG 469
Query 587 TTGTTGGAGAATATGGTGATGAGATGAAGAAACTAGCTCAGATGCTATTAGGGCTAATCT 646
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 470 TTGTTGGAGAATATGGTGATGAGATGAAGAAACTAGCTCAGATGCTATTAGAGCTAATCT 529
Query 647 CAGAGAGTTTGGGTCTTCCTTGTTCATCTATAGAAGAAGCTGTTGGTGAAATCTATCAGA 706
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 530 CAGAGACTTTGGGTCTTCCTTGTTCATCTATCGAAGAAGCTGTTGGTGAAATCTATCAAA 589
Query 707 ACATTACTGTAACCTATTACCCTCCTTGTCCTCAGCCTGAGCTCACTCTTGGTCTTCAGT 766
|||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 590 ACATTACTGTGAGTTATTACCCTCCTTGTCCTCAGCCTGAGCTCACACTTGGTCTTCAGT 649
Query 767 CTCATTCCGATTTTGGTGCCATTACTCTCTTGATTCAAGATGATGTTGAAGGTCTTCAGC 826
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 650 CTCATTCCGATATGGGTGCCATTACTCTCTTGATTCAAGATGATGTTGGAGGTCTTCAGC 709
Query 827 TTTACAAGGATGCTCAATGGCTCACTGTTCCTCCTATCTCTGATGCTATTCTCATTCTTA 886
|||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 710 TTTACAAGGATGCTCAATGGCTCACTGTTCCTCCTAACTCTCATGCTATTCTTGTTCTTA 769
Query 887 TTGCCGATCAAACCGAGATCATTACCAATGGAAGATACAAAAGTGCTCAACATAGAGCTG 946
| ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||| |
Sbjct 770 TAGCCGATCAAACTGAGATCATAACCAATGGGATATACAAAAGTGCTCAACATAGAGCCG 829
Query 947 TGACTAATGCGAATCGGGCGCGGTTATCAGTCGCTACCTTTCATGATCCCTCCAAGACTG 1006
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 830 TAACTAATGCGAATCGGGCACGGTTATCAGTCGCTACCTTTCATGATCCTTCCAAGACTG 889
Query 1007 CAAGGATAGCACCAGTTTCTCAACTCTCCCCACCGTCTTACAAGGAAGTTGTGTATGGTC 1066
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 890 CAAGTATAGCACCAGTTTCTCAACTATCCCCACCGTCTTACAAGGAAGTTGTATATGGTC 949
Query 1067 AATATGTTTCTTCCTGGTACTCTAAAGGTCCTGAGGGTAAACGAAACCTCGATGCTCTTC 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AATATGTTTCTTCCTGGTACTCTAAAGGTCCTGAGGGTAAACGAAACCTCGATGCTCTTC 1009
Query 1127 TCTACTAA 1134
||||||||
Sbjct 1010 TCTACTAA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48987948345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5