BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16350.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493251 jgi|Araly1|493251|fgenesh2_kg.7__2684__AT4G16350.1 1354 0.0
> Ahg493251 jgi|Araly1|493251|fgenesh2_kg.7__2684__AT4G16350.1
Length=889
Score = 1354 bits (733), Expect = 0.0
Identities = 810/847 (96%), Gaps = 5/847 (1%)
Strand=Plus/Plus
Query 1 GAAGCTTCTTTACACGCTAACGAGaaaaaaaGAATAGGCATGGACATAGTGACTTTTGGG 60
|||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||
Sbjct 1 GAAGCTTCTTTACACGCTAACGAGGAAAAAAGAAAAGGCATGGAAATAGTGAGTTTTGGG 60
Query 61 AGAGATGATGATGCAATGTTTAGATGGATTAAAGCACTTAGCCTTAATTCTGTTGACTTG 120
|||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 61 GGAGAGGATGATGCAATGTTTAGATGGAATAAAGCACTTATCCTTAATTCTGTTGACTTG 120
Query 121 TTGTGATGCTGATCCTCCCAAGGTTCGTCAGAACCCTAAGGATGTGGCTAGAGGCACTGT 180
||||||| |||||| |||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 121 TTGTGATTCTGATCTTCCCAAGGGTCTTCAGAACCCTAAAGATGTGGCTAGAGGCACTGT 180
Query 181 GTTTACAGTGAATGAGATTGAAGCTCTTTACGAACTGTTCAAGAGCATTAGCAAAAACGG 240
|||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 GTTTACTGTCAATGAGATTGAAGCTCTTTACGAACTGTTCAAGAGCATTAGCAAAGACGG 240
Query 241 GCTTATCGACAAGGAACAATTTCAATTGGTACTATTCAAAATGAACACAACGAGAAGCCT 300
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GCTTATCGATAAGGAACAATTTCAATTGGTACTATTCAAGATGAACACAACGAGAAGCCT 300
Query 301 TTTTGCTGATAGGGTGTTTGACTTGTTTGATACCAAGAATACTGGGATTCTAGATTTTGA 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TTTTGCTGATAGGGTGTTTGACTTGTTTGATACCAAGCATACTGGGATTCTAGATTTTGA 360
Query 361 AGCCTTTGCTCGTTCACTTTCGGTCTTTCACCCTAATGCTAAATTTGAGGATAAGATTGA 420
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 AGCCTTTGCTCGTTCTCTTTCGGTCTTTCACCCCAATGCTAAATTTGAGGATAAGATTGA 420
Query 421 GTTCTCTTTCAAGCTGTATGATCTGAATCAGCAAGGTTATATAAAGAGACAGGAGGTGAA 480
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GTTTTCTTTCAAGCTGTATGATCTGAAGCAGCAAGGTTATATAAAGAGACAGGAGGTGAA 480
Query 481 GCAAATGGTTGTGCGGACTCTAGCTGAATCTGGCATGAACCTTTCTGATCATGTGATTGA 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 GCAAATGGTTGTGCGGACTCTAGCTGAATCTGGCATGAACCTTTCCGATCATGTGATTGA 540
Query 541 GAGCATCATAGACAAGACATTTGAAGAAGCTGATACTAAACTGGACGGGAAGATTGATAA 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 GAGCATCATAGACAAGACATTTGAAGAAGCTGATACTAAACTGGATGGGAAGATTGATAA 600
Query 601 GGAAGAGTGGAGGAGTCTTGTGTTGCGCCACCCCTCTCTGTTACAGAACATGAGCCTTCA 660
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 601 GGAAGAGTGGCGGAGTCTTGTGTTGCGCCATCCCTCTCTGTTGCAGAACATGAGCCTTCA 660
Query 661 ACATCTCAAAGACGTAACAAAGACGTTTCCAAATTTTGTATTTCACACTATAGTGACAGA 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACATCTCAAAGACGTAACGAAGACGTTTCCAAATTTTGTATTTCACACTATAGTGACAGA 720
Query 721 CACTCCTAGTGAGCTGGATGGATGATCAGGGATGTGAAGAAA-GACCAAAACCCTTTACA 779
||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 721 CACTCCTAGTGAGCTGGATAGATGATCAGGGATGTGAAGAAAAGACCAAAACC-TTTACA 779
Query 780 AGATCATTCATACTTGATTCTTATCTTCTTCTCCATT-ACTCTATTACAACCCTCCTCTT 838
||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||
Sbjct 780 AGATCATTCATACTTGATTCT-ATCTTCTTCTCCATTCA-TCTATTACAACCCTCCTTTT 837
Query 839 TATTTTT 845
| |||||
Sbjct 838 TTTTTTT 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5