BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16360.3
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946634 jgi|Araly1|946634|scaffold_702863.1 1314 0.0
> Ahg946634 jgi|Araly1|946634|scaffold_702863.1
Length=817
Score = 1314 bits (711), Expect = 0.0
Identities = 773/803 (96%), Gaps = 4/803 (0%)
Strand=Plus/Plus
Query 497 GCTATGTCTGCTGCTTCTGATGGTAACCATGTCGCTCCTCCTGAGCTTATGGGTCAATCT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 GCTATGTCTGCTGCTTCTGATGGTAACCATGTCGCTCCTCCTGAGCTTATGGGTCAATCT 77
Query 557 CCTCCTCATAGCCCTCGAGCTACTCAGTCTCCTCTCATGTTTGCTCCTCAGGTTCCGGTG 616
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 78 CCTCCTCATAGTCCTCGAGCCACTCAGTCTCCTCTCATGTTTGCTCCTCAGGTTCCTGTG 137
Query 617 CTTCCACTTCAAAGACCTGATGAAATTCATATCCCTAATCCTTCGTGGATGCAATCGCCA 676
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||
Sbjct 138 CTTCCACTTCAAAGACCTGATGAAATTCACATCCCGAATCCTTCTTGGATGCAATCTCCA 197
Query 677 TCTTCGTTGTATGAAGAAGCTTCTAACGAACAAGGAATCCCTACGATGATCACTTGGTGT 736
||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 198 TCTTCGT---ATGAAGAAGCTTCTAACGAGCAAGGAATCCCTACGATGATCACATGGTGC 254
Query 737 CATGGAGGCAAGGAGATTGCTGTGGAGGGATCATGGGATAATTGGAAGACAAGAAGTCGG 796
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 255 CATGGAGGCAAAGAGATTGCTGTGGAGGGATCATGGGACAATTGGAAGACAAGAAGTCGG 314
Query 797 CTGCAGAGATCTGGGAAGGACTTCACTATCATGAAAGTGTTACCTTCAGGAGTCTATGAG 856
|| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 315 CTACAGAGATCTGGGAAGGACTTCACAATCATGAAAGTGTTGCCTTCAGGCGTCTATGAG 374
Query 857 TACAGGTTCATTGTGGATGGACAGTGGAGGCATGCCCCTGAGCTCCCTTTAGCTAGAGAT 916
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 375 TACAGGTTCATTGTGGATGGACAGTGGAGGCATGCCCCTGAGCTCCCTTTGGCTAGAGAT 434
Query 917 GATGCTGGGAACACTTTCAACATTTTGGATCTTCAGGACTATGTTCCTGAAGACATTCAA 976
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GATGCTGGAAACACTTTCAACATTTTGGATCTTCAGGACTATGTTCCTGAAGACATTCAA 494
Query 977 AGCATATCTGGGTTTGAGCCTCCGCAATCTCCAGAGAATAGTTACAGCAACTTGCTTCTC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AGCATATCTGGGTTTGAGCCTCCGCAATCTCCAGAGAATAGTTACAGCAACTTGCTTCTC 554
Query 1037 GGAGCTGAGGACTACTCTAAAGAACCGCCTGTGGTTCCCCCGCACCTACAAATGACACTG 1096
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 555 GGAGCTGAGGATTACTCTAAAGAACCGCCTGTGGTTCCCCCTCACCTACAGATGACACTG 614
Query 1097 CTGAACTTGCCGGCAGCCAATCCTGACATTCCATCTCCGCTGCCGAGACCTCAGCATGTC 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CTGAACTTGCCGGCAGCCAATCCTGACATTCCATCTCCGCTGCCGAGACCTCAGCATGTC 674
Query 1157 ATTCTCAATCATCTTTACATGCAGAAGGGCAAAAGTGGTCCTTCTGTGGTTGCGCTTGGT 1216
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ATCCTCAATCATCTCTACATGCAGAAGGGCAAAAGTGGTCCTTCTGTGGTTGCGCTTGGT 734
Query 1217 TCCACTCACCGATTTCTAGCAAAGTATGTAACTGTGGTGCTCTACAAATCCCTGCAGAGG 1276
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 735 TCCACTCACCGCTTTCTAGCAAAGTACGTAACTGTGGTGCTCTACAAGTCCCTGCAGAGG 794
Query 1277 TGAGTGAAGATGATGC-AATTCC 1298
|||||||||||||||| ||||||
Sbjct 795 TGAGTGAAGATGATGCCAATTCC 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5