BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16380.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2 1269 0.0
> Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2
Length=1013
Score = 1269 bits (687), Expect = 0.0
Identities = 912/1010 (90%), Gaps = 57/1010 (6%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCCCTTGAAGTAGACTCTAAGCTAAAGCCACCGTCAGATTTTCAGATCTCAG 60
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TCTCTCTCTCTCTTGAAGTAGACTCTAAGCTAAAGCCACCGTCAGA-TTTCAGATCTCAG 59
Query 61 ATCTCAGCTCTTCATTCGACGCCATGGCCGAGAAGGGCAAAGAAAAGGTAACTATGATGA 120
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 60 ATCTCAGCTCTTCATTCGAAGCCATGGCCGAGAAGGGCAAGGAAAAGGTAACTATGATGA 119
Query 121 AGTTGAAGGTGGATCTTGATTGTGCCAAATGTTACAAGAAAGTGAAGAAGGTTCTTTGCA 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 AGTTGAAGGTGGATCTTGATTGTGCCAAGTGTTACAAGAAAGTGAAGAAGGTTCTTTGCA 179
Query 181 AGTTCCCTCAAATAAGAGACCAATTGTTCGATGAAAAGTCCAACATTGTTATCATCAAGG 240
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 180 AATTCCCTCAAATAAGAGACCAATTGTTCGATGAAAAGTCCAACATTGTCATCATCAAAG 239
Query 241 TGGTTTGCTGTAGTCCTGAGAGGATCATGGACAAACTCTGTTCCAAAGGCGGCGGCTCGA 300
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGTTTGCTGCAGTCCTGAGAAGATCATGGACAAACTCTGTTCCAAAGGCGGCGGCTCGA 299
Query 301 TAAAGACCATTGAGATCGTCGAGCCACCCAAGCCTCCTCAGCCACAACCCCAACAACCAC 360
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 TAAAGACCATCGAGATCGTCGAGCCACCCAAGCCTCCTCAGCCACAAGCCCAACAACCAC 359
Query 361 CT---CAGAAACCTAAAGATGCTCAGCCTAAAGCTCCTGAGAAGCCTAAGGAACCTgaaa 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCCCCAGAAACCTAAAGATGCTCAGCCTAAAGCTCCTGAGAAGCCTAAGGAACCTGAAA 419
Query 418 agccaaaacagcctgaaaagcttaaagagccagagaagcccaaacagccagaaaagccca 477
|||| |||||||||||||||| ||||| || || ||||| || || || ||||||||||
Sbjct 420 AGCCGAAACAGCCTGAAAAGCCCAAAGAACCCGAAAAGCCGAAGCAACCCGAAAAGCCCA 479
Query 478 aaGAACCCGAAAAGACGAAGCAacccgcacccgctccagctcccgcaccagcacccgcag 537
||||||||| | | ||| |||||| || | | | || ||||| || |||||
Sbjct 480 AAGAACCCGCTC---C-A-GCA-CCCGCA---GC-CAAAC-CC-GCACCCGCTCCCGC-- 525
Query 538 ccaaacccgcacccgctcccgctccaGCTCCCGCACCTGCCCCGAAGCAGCCGGGACCGC 597
|| | || || || |||||||| | || || | |||||||||||||||||
Sbjct 526 CC---CT-GCGCCAGCACCCGCTCC---T---GC-CC--C---GAAGCAGCCGGGACCGC 569
Query 598 CACCGCAAGCGATCCCGATGATGCCGCAAGGGCAGCCAGCAATGTGTTGCGGGCCCTACT 657
| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 570 CTGTG---GCGATCCCGATGATGCCGCAAGGGCAGCCAGCAATGTGTTGTGGGCCCTACT 626
Query 658 ACGATGGATACGGAGGGCCAGCATTCAATGGATATGGAATGCCGCCGC---AGCCTTACG 714
|||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 627 ACGACGGATACGGAGGGCCATCGTTCAATGGATATGGAATGCCGCCGCCGCAGCCTTACG 686
Query 715 AGTGCTATGGACGACCAGTCTACGAGAGCTGGGGTGGGGGCTGCCCACCACCACCACCTG 774
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 687 AGTGCTATGGCCGACCAGTCTACGAGAGCTGGGGTGGGGGCTGCCCACCACCACC---TG 743
Query 775 CTTATAGACAATGCCACGTCACTAGATGTGATTACTTCAGCGAAGAGAATCCACAGAGCT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CTTATAGACAATGCCACGTCACTAGATGTGATTACTTCAGCGAAGAGAATCCACAGAGCT 803
Query 835 GTTCCATCATGTGAATTTGACTTCTTTATCTCTAAATCCTTTATTTTTCCTTTAATCttt 894
||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 804 GTTCCATCATGTGAATT-GACTTCTTTATCTTTAAATCCTT-ATTTTTCCTTTAATCTTT 861
Query 895 ttttCTTCTTATACAAATAATAATTaaaa-aaaTATA--GAGA--TGTTTACGTGTAATG 949
||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 862 TTTTCTT---ATACAAATAATAATTAAAACAAATATATAGAGAGATGTTTACGTGTAATG 918
Query 950 TTGTGATTAAGAGAACCAATAAGGAAGGAA----CGTTGTATTTTGTAAA 995
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 919 TTGTGATTAAGAGAACCAATAAGGAAGGAAGGATCGTTGTATTTTGTAAA 968
Score = 75.0 bits (40), Expect = 1e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1052 AAAGAAATTTGTTTCATGTTCTTCTTTATATGAACCAATAATAGTA 1097
||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 968 AAAGAAAATTGTTTCATTTTCTTCTTTATATGAACCAATAATAGTA 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5