BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16380.1 Length=1112 Score E Sequences producing significant alignments: (Bits) Value Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2 1269 0.0 > Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2 Length=1013 Score = 1269 bits (687), Expect = 0.0 Identities = 912/1010 (90%), Gaps = 57/1010 (6%) Strand=Plus/Plus Query 1 TCTCTCTCTCCCTTGAAGTAGACTCTAAGCTAAAGCCACCGTCAGATTTTCAGATCTCAG 60 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 TCTCTCTCTCTCTTGAAGTAGACTCTAAGCTAAAGCCACCGTCAGA-TTTCAGATCTCAG 59 Query 61 ATCTCAGCTCTTCATTCGACGCCATGGCCGAGAAGGGCAAAGAAAAGGTAACTATGATGA 120 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 60 ATCTCAGCTCTTCATTCGAAGCCATGGCCGAGAAGGGCAAGGAAAAGGTAACTATGATGA 119 Query 121 AGTTGAAGGTGGATCTTGATTGTGCCAAATGTTACAAGAAAGTGAAGAAGGTTCTTTGCA 180 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 120 AGTTGAAGGTGGATCTTGATTGTGCCAAGTGTTACAAGAAAGTGAAGAAGGTTCTTTGCA 179 Query 181 AGTTCCCTCAAATAAGAGACCAATTGTTCGATGAAAAGTCCAACATTGTTATCATCAAGG 240 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 180 AATTCCCTCAAATAAGAGACCAATTGTTCGATGAAAAGTCCAACATTGTCATCATCAAAG 239 Query 241 TGGTTTGCTGTAGTCCTGAGAGGATCATGGACAAACTCTGTTCCAAAGGCGGCGGCTCGA 300 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 TGGTTTGCTGCAGTCCTGAGAAGATCATGGACAAACTCTGTTCCAAAGGCGGCGGCTCGA 299 Query 301 TAAAGACCATTGAGATCGTCGAGCCACCCAAGCCTCCTCAGCCACAACCCCAACAACCAC 360 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 300 TAAAGACCATCGAGATCGTCGAGCCACCCAAGCCTCCTCAGCCACAAGCCCAACAACCAC 359 Query 361 CT---CAGAAACCTAAAGATGCTCAGCCTAAAGCTCCTGAGAAGCCTAAGGAACCTgaaa 417 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTCCCCAGAAACCTAAAGATGCTCAGCCTAAAGCTCCTGAGAAGCCTAAGGAACCTGAAA 419 Query 418 agccaaaacagcctgaaaagcttaaagagccagagaagcccaaacagccagaaaagccca 477 |||| |||||||||||||||| ||||| || || ||||| || || || |||||||||| Sbjct 420 AGCCGAAACAGCCTGAAAAGCCCAAAGAACCCGAAAAGCCGAAGCAACCCGAAAAGCCCA 479 Query 478 aaGAACCCGAAAAGACGAAGCAacccgcacccgctccagctcccgcaccagcacccgcag 537 ||||||||| | | ||| |||||| || | | | || ||||| || ||||| Sbjct 480 AAGAACCCGCTC---C-A-GCA-CCCGCA---GC-CAAAC-CC-GCACCCGCTCCCGC-- 525 Query 538 ccaaacccgcacccgctcccgctccaGCTCCCGCACCTGCCCCGAAGCAGCCGGGACCGC 597 || | || || || |||||||| | || || | ||||||||||||||||| Sbjct 526 CC---CT-GCGCCAGCACCCGCTCC---T---GC-CC--C---GAAGCAGCCGGGACCGC 569 Query 598 CACCGCAAGCGATCCCGATGATGCCGCAAGGGCAGCCAGCAATGTGTTGCGGGCCCTACT 657 | | ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 570 CTGTG---GCGATCCCGATGATGCCGCAAGGGCAGCCAGCAATGTGTTGTGGGCCCTACT 626 Query 658 ACGATGGATACGGAGGGCCAGCATTCAATGGATATGGAATGCCGCCGC---AGCCTTACG 714 |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||| Sbjct 627 ACGACGGATACGGAGGGCCATCGTTCAATGGATATGGAATGCCGCCGCCGCAGCCTTACG 686 Query 715 AGTGCTATGGACGACCAGTCTACGAGAGCTGGGGTGGGGGCTGCCCACCACCACCACCTG 774 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 687 AGTGCTATGGCCGACCAGTCTACGAGAGCTGGGGTGGGGGCTGCCCACCACCACC---TG 743 Query 775 CTTATAGACAATGCCACGTCACTAGATGTGATTACTTCAGCGAAGAGAATCCACAGAGCT 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 744 CTTATAGACAATGCCACGTCACTAGATGTGATTACTTCAGCGAAGAGAATCCACAGAGCT 803 Query 835 GTTCCATCATGTGAATTTGACTTCTTTATCTCTAAATCCTTTATTTTTCCTTTAATCttt 894 ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| Sbjct 804 GTTCCATCATGTGAATT-GACTTCTTTATCTTTAAATCCTT-ATTTTTCCTTTAATCTTT 861 Query 895 ttttCTTCTTATACAAATAATAATTaaaa-aaaTATA--GAGA--TGTTTACGTGTAATG 949 ||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||| Sbjct 862 TTTTCTT---ATACAAATAATAATTAAAACAAATATATAGAGAGATGTTTACGTGTAATG 918 Query 950 TTGTGATTAAGAGAACCAATAAGGAAGGAA----CGTTGTATTTTGTAAA 995 |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 919 TTGTGATTAAGAGAACCAATAAGGAAGGAAGGATCGTTGTATTTTGTAAA 968 Score = 75.0 bits (40), Expect = 1e-12 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 1052 AAAGAAATTTGTTTCATGTTCTTCTTTATATGAACCAATAATAGTA 1097 ||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 968 AAAGAAAATTGTTTCATTTTCTTCTTTATATGAACCAATAATAGTA 1013 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41439610779 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5