BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16400.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493244 jgi|Araly1|493244|fgenesh2_kg.7__2677__AT4G16410.1 811 0.0
Ahg329873 jgi|Araly1|329873|fgenesh1_pm.C_scaffold_7002100 470 1e-131
> Ahg493244 jgi|Araly1|493244|fgenesh2_kg.7__2677__AT4G16410.1
Length=641
Score = 811 bits (439), Expect = 0.0
Identities = 505/536 (94%), Gaps = 7/536 (1%)
Strand=Plus/Minus
Query 623 ACAACTTGAGAGACGATATAGAAGCTACCACCTAAGATGAGTAGAATGAGAATGGCGGAG 682
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 531 ACAACTTGAGAGACGATATAGAAGCTTCCACCTAAGATGAGCAGAATGAGAATGGCGGAG 472
Query 683 ATTGGGTTCTTGAGGAGCTCAAAGATGGGCTCAAAGACAGCAGAGAGAGCTCCAGTGCTA 742
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATTGGGTTCTTGAGGAGTTCGAAGATGGGCTCAAAGACAGCAGAGAGAGCTCCAGTGCTA 412
Query 743 ACCGTGAGAGCGTAAAGACCGTACCTTCTAACGTTGTCCCAAAACTCTTCCATTAAAGGA 802
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ACCGTAAGAGCGTAAAGACCGTACCTTCTAACGTTGTCCCAAAACTCTTCCATTAAAGGA 352
Query 803 CCTTCTGGTCCAAGCGCCATAGCTTTCTCTGCATCCATTCCCAATACCAAAACCATCATC 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 351 CCTTCTGGTCCAAGCGCCATAGCTTTCTCTGCATCCATTCCCAATACCAAAACCATCAGC 292
Query 863 AACCCTACAGAGACTCCACCAACCACAGCATATCTCCAGTGCCGTTCCAAACCCAGAGGA 922
||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 291 AACCCTACAGAGACTCCACCAACCACAGCATGTCTCCAGTGTCGCTCCAAACCCAGAGGC 232
Query 923 GGAGGTTGTGCTCTTT-CAAGCTTGCTGTTTCTGCTACTTTTCGTAGTCAATCTTCTTCT 981
| |||||| |||| ||||||||||| ||||| | ||||||||||| |||||||||||
Sbjct 231 TG---TTGTGC-CTTTTCAAGCTTGCTGCTTCTGGTGCTTTTCGTAGTTAATCTTCTTCT 176
Query 982 GGCTGAGCCACACCGAACAAGACATGATGTTCTGTTCCTTATGCTTGAGCTTGGAAAAGC 1041
| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 175 GCCTGAGCCGCACCGAACAAGACATGATGTTCTGTTCCTTATGTTTGAGCTCGGAAAAGC 116
Query 1042 TAGAGCTGCTGCTATTGATCTGCTACTGGTAAAATGGAGGTGTGGTTGCAGACAAGATAG 1101
|||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 115 TAGAGCTGCTGCTAATGATCTGCTACAGCTAAAATGGAGGTGAGGTTGCAGACAAGATAG 56
Query 1102 TCT-CATTTTGGGGAGAGACATCATCGTCATCTCACTTCTTCCTTTCCTTGTAGGA 1156
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 55 -CTTCATTTTGGGGAGAGACATCATCGTCATCTCACTTCTTGCTTTCCTTGTAGGA 1
> Ahg329873 jgi|Araly1|329873|fgenesh1_pm.C_scaffold_7002100
Length=579
Score = 470 bits (254), Expect = 1e-131
Identities = 302/324 (93%), Gaps = 8/324 (2%)
Strand=Plus/Plus
Query 300 GTTTTTGGATTCAACAtc-tctccatttctctcctctctctctT-ACCAAGTTCAATCAC 357
|||||||| ||||||||| ||||| || | | |||||||| || ||| |||||||||||
Sbjct 251 GTTTTTGGCTTCAACATCTTCTCC-TTAAT-T-CTCTCTCTGTTCACCGAGTTCAATCAC 307
Query 358 AAGGAAATGGAGATCCAGGCAAAGCTCATGGAATACAGATTCCATTTCATGGTGA-CAAT 416
|| | ||||||||||||||||| ||| |||||||||||||||||||||||||| | ||||
Sbjct 308 AA-GTAATGGAGATCCAGGCAAGGCTAATGGAATACAGATTCCATTTCATGGT-AGCAAT 365
Query 417 CATGGTGAGCGTGATTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTCTGAACATTTT 476
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 366 CATGGTGAGCGTGGTTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTGTGAACATTTT 425
Query 477 AGCCTATTTCTGGCCTCTGTTTGCGTCAACAGCCGCCTTCTTAGCGATGGCAATCACCTT 536
||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 426 AGCTTATTTCTGGCCTCTGTTTGCGTCAACGGCCGCCTTCTTAGCGGTGGCAATCACCTT 485
Query 537 TGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC 545
Query 597 CGGACGGCCTGAGGATTCTCACAA 620
||||||||||||||||||||||||
Sbjct 546 CGGACGGCCTGAGGATTCTCACAA 569
Score = 363 bits (196), Expect = 2e-99
Identities = 234/252 (93%), Gaps = 3/252 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAACTGCATTCACACGTTGCTCTGCAAGCATGGAAACAAGGTTACAGATGTCTGG 60
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAACTGCATTCACACATTGCTCCGCAAGCATGGAAACAAAGTTACAGATGTCTGG 60
Query 61 TCGGATGATGAGGCATCAACAGAGAAGATCAAGGAGTCACCTCAGGATGCAGCTGAGCAG 120
||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||| ||
Sbjct 61 TCGGATGATGAAGCATCAACAGAGACGGCCAAGGAGTCACCTCAGGATGCAACTGAG-AG 119
Query 121 AAGAAAACAGGGACAAGGCGGTGCATAAAGATCACTCTGACTAGGAAACAGCTCGAGCAG 180
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 120 --CAAAACTGGGAGAAGGCGGTGCATAAAGATCACTCTGACAAGGAAACAGCTCGAGCTG 177
Query 181 CTGCTGCAACAAAATCCTCAAGGCGTTTCATTTCAGCGGAAATGGAAGCCATCTTTGCAG 240
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 CTGCTGCGACAAAATCCTCAAGGCGTTTCGTTTCAGCGGAAATGGAAGCCATCTTTGCAG 237
Query 241 ACAATAGTAGAG 252
||||||||||||
Sbjct 238 ACAATAGTAGAG 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5