BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16400.1 Length=1225 Score E Sequences producing significant alignments: (Bits) Value Ahg493244 jgi|Araly1|493244|fgenesh2_kg.7__2677__AT4G16410.1 811 0.0 Ahg329873 jgi|Araly1|329873|fgenesh1_pm.C_scaffold_7002100 470 1e-131 > Ahg493244 jgi|Araly1|493244|fgenesh2_kg.7__2677__AT4G16410.1 Length=641 Score = 811 bits (439), Expect = 0.0 Identities = 505/536 (94%), Gaps = 7/536 (1%) Strand=Plus/Minus Query 623 ACAACTTGAGAGACGATATAGAAGCTACCACCTAAGATGAGTAGAATGAGAATGGCGGAG 682 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 531 ACAACTTGAGAGACGATATAGAAGCTTCCACCTAAGATGAGCAGAATGAGAATGGCGGAG 472 Query 683 ATTGGGTTCTTGAGGAGCTCAAAGATGGGCTCAAAGACAGCAGAGAGAGCTCCAGTGCTA 742 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 471 ATTGGGTTCTTGAGGAGTTCGAAGATGGGCTCAAAGACAGCAGAGAGAGCTCCAGTGCTA 412 Query 743 ACCGTGAGAGCGTAAAGACCGTACCTTCTAACGTTGTCCCAAAACTCTTCCATTAAAGGA 802 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 ACCGTAAGAGCGTAAAGACCGTACCTTCTAACGTTGTCCCAAAACTCTTCCATTAAAGGA 352 Query 803 CCTTCTGGTCCAAGCGCCATAGCTTTCTCTGCATCCATTCCCAATACCAAAACCATCATC 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 351 CCTTCTGGTCCAAGCGCCATAGCTTTCTCTGCATCCATTCCCAATACCAAAACCATCAGC 292 Query 863 AACCCTACAGAGACTCCACCAACCACAGCATATCTCCAGTGCCGTTCCAAACCCAGAGGA 922 ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| Sbjct 291 AACCCTACAGAGACTCCACCAACCACAGCATGTCTCCAGTGTCGCTCCAAACCCAGAGGC 232 Query 923 GGAGGTTGTGCTCTTT-CAAGCTTGCTGTTTCTGCTACTTTTCGTAGTCAATCTTCTTCT 981 | |||||| |||| ||||||||||| ||||| | ||||||||||| ||||||||||| Sbjct 231 TG---TTGTGC-CTTTTCAAGCTTGCTGCTTCTGGTGCTTTTCGTAGTTAATCTTCTTCT 176 Query 982 GGCTGAGCCACACCGAACAAGACATGATGTTCTGTTCCTTATGCTTGAGCTTGGAAAAGC 1041 | ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 175 GCCTGAGCCGCACCGAACAAGACATGATGTTCTGTTCCTTATGTTTGAGCTCGGAAAAGC 116 Query 1042 TAGAGCTGCTGCTATTGATCTGCTACTGGTAAAATGGAGGTGTGGTTGCAGACAAGATAG 1101 |||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 115 TAGAGCTGCTGCTAATGATCTGCTACAGCTAAAATGGAGGTGAGGTTGCAGACAAGATAG 56 Query 1102 TCT-CATTTTGGGGAGAGACATCATCGTCATCTCACTTCTTCCTTTCCTTGTAGGA 1156 || ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 55 -CTTCATTTTGGGGAGAGACATCATCGTCATCTCACTTCTTGCTTTCCTTGTAGGA 1 > Ahg329873 jgi|Araly1|329873|fgenesh1_pm.C_scaffold_7002100 Length=579 Score = 470 bits (254), Expect = 1e-131 Identities = 302/324 (93%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 300 GTTTTTGGATTCAACAtc-tctccatttctctcctctctctctT-ACCAAGTTCAATCAC 357 |||||||| ||||||||| ||||| || | | |||||||| || ||| ||||||||||| Sbjct 251 GTTTTTGGCTTCAACATCTTCTCC-TTAAT-T-CTCTCTCTGTTCACCGAGTTCAATCAC 307 Query 358 AAGGAAATGGAGATCCAGGCAAAGCTCATGGAATACAGATTCCATTTCATGGTGA-CAAT 416 || | ||||||||||||||||| ||| |||||||||||||||||||||||||| | |||| Sbjct 308 AA-GTAATGGAGATCCAGGCAAGGCTAATGGAATACAGATTCCATTTCATGGT-AGCAAT 365 Query 417 CATGGTGAGCGTGATTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTCTGAACATTTT 476 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 366 CATGGTGAGCGTGGTTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTGTGAACATTTT 425 Query 477 AGCCTATTTCTGGCCTCTGTTTGCGTCAACAGCCGCCTTCTTAGCGATGGCAATCACCTT 536 ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 426 AGCTTATTTCTGGCCTCTGTTTGCGTCAACGGCCGCCTTCTTAGCGGTGGCAATCACCTT 485 Query 537 TGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC 596 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 CGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC 545 Query 597 CGGACGGCCTGAGGATTCTCACAA 620 |||||||||||||||||||||||| Sbjct 546 CGGACGGCCTGAGGATTCTCACAA 569 Score = 363 bits (196), Expect = 2e-99 Identities = 234/252 (93%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 1 ATGGGAAACTGCATTCACACGTTGCTCTGCAAGCATGGAAACAAGGTTACAGATGTCTGG 60 |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| Sbjct 1 ATGGGAAACTGCATTCACACATTGCTCCGCAAGCATGGAAACAAAGTTACAGATGTCTGG 60 Query 61 TCGGATGATGAGGCATCAACAGAGAAGATCAAGGAGTCACCTCAGGATGCAGCTGAGCAG 120 ||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||| || Sbjct 61 TCGGATGATGAAGCATCAACAGAGACGGCCAAGGAGTCACCTCAGGATGCAACTGAG-AG 119 Query 121 AAGAAAACAGGGACAAGGCGGTGCATAAAGATCACTCTGACTAGGAAACAGCTCGAGCAG 180 ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 120 --CAAAACTGGGAGAAGGCGGTGCATAAAGATCACTCTGACAAGGAAACAGCTCGAGCTG 177 Query 181 CTGCTGCAACAAAATCCTCAAGGCGTTTCATTTCAGCGGAAATGGAAGCCATCTTTGCAG 240 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 178 CTGCTGCGACAAAATCCTCAAGGCGTTTCGTTTCAGCGGAAATGGAAGCCATCTTTGCAG 237 Query 241 ACAATAGTAGAG 252 |||||||||||| Sbjct 238 ACAATAGTAGAG 249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45747500400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5