BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16410.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493244 jgi|Araly1|493244|fgenesh2_kg.7__2677__AT4G16410.1 972 0.0
> Ahg493244 jgi|Araly1|493244|fgenesh2_kg.7__2677__AT4G16410.1
Length=641
Score = 972 bits (526), Expect = 0.0
Identities = 609/648 (94%), Gaps = 10/648 (2%)
Strand=Plus/Plus
Query 1 TCCTACAAGGAAAGGAAGAAGTGAGATGACGATGATGTCTCTCCCCAAAATG-AGACTAT 59
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 TCCTACAAGGAAAGCAAGAAGTGAGATGACGATGATGTCTCTCCCCAAAATGAAG-CTAT 59
Query 60 CTTGTCTGCAACCACACCTCCATTTTACCAGTAGCAGATCAATAGCAGCAGCTCTAGCTT 119
||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 60 CTTGTCTGCAACCTCACCTCCATTTTAGCTGTAGCAGATCATTAGCAGCAGCTCTAGCTT 119
Query 120 TTCCAAGCTCAAGCATAAGGAACAGAACATCATGTCTTGTTCGGTGTGGCTCAGCCAGAA 179
|||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 120 TTCCGAGCTCAAACATAAGGAACAGAACATCATGTCTTGTTCGGTGCGGCTCAGGCAGAA 179
Query 180 GAAGATTGACTACGAAAAGTAGCAGAAACAGCAAGCTTG-AAAGAGCACAACCTCCTCCT 238
||||||| ||||||||||| | ||||| ||||||||||| |||| |||||| | |||
Sbjct 180 GAAGATTAACTACGAAAAGCACCAGAAGCAGCAAGCTTGAAAAG-GCACAA---CAGCCT 235
Query 239 CTGGGTTTGGAACGGCACTGGAGATATGCTGTGGTTGGTGGAGTCTCTGTAGGGTTGATG 298
||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 236 CTGGGTTTGGAGCGACACTGGAGACATGCTGTGGTTGGTGGAGTCTCTGTAGGGTTGCTG 295
Query 299 ATGGTTTTGGTATTGGGAATGGATGCAGAGAAAGCTATGGCGCTTGGACCAGAAGGTCCT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATGGTTTTGGTATTGGGAATGGATGCAGAGAAAGCTATGGCGCTTGGACCAGAAGGTCCT 355
Query 359 TTAATGGAAGAGTTTTGGGACAACGTTAGAAGGTACGGTCTTTACGCTCTCACGGTTAGC 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 356 TTAATGGAAGAGTTTTGGGACAACGTTAGAAGGTACGGTCTTTACGCTCTTACGGTTAGC 415
Query 419 ACTGGAGCTCTCTCTGCTGTCTTTGAGCCCATCTTTGAGCTCCTCAAGAACCCAATCTCC 478
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 416 ACTGGAGCTCTCTCTGCTGTCTTTGAGCCCATCTTCGAACTCCTCAAGAACCCAATCTCC 475
Query 479 GCCATTCTCATTCTACTCATCTTAGGTGGTAGCTTCTATATCGTCTCTCAAGTTGTTTCT 538
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 476 GCCATTCTCATTCTGCTCATCTTAGGTGGAAGCTTCTATATCGTCTCTCAAGTTGTCTCC 535
Query 539 GCCATGATTGGTGTCAACGAATTCGCTTATCAATACAGTTATTGACCAA-CTATAGTTTG 597
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 536 GCCATGATTGGTGTCAACGAATTCGCTTATGAATACAGTTATTGACCAAACTATAGTTCG 595
Query 598 TTTTTGTTTTCTTCATTAATACTCTGCTTTTATGCTCTGttttttttt 645
|||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 596 TTTTTGTTCTCTTCATTAATACTCTGCTTTTATGCT--GTTTTTTTTT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5