BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16430.1
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946622 jgi|Araly1|946622|scaffold_702851.1 2274 0.0
> Ahg946622 jgi|Araly1|946622|scaffold_702851.1
Length=1447
Score = 2274 bits (1231), Expect = 0.0
Identities = 1351/1411 (96%), Gaps = 0/1411 (0%)
Strand=Plus/Plus
Query 247 GAGAAATGGGTCAAAAGTTTTGGGAGAATCAAGAAGATCGAGCGATGGTTGAATCCACCA 306
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 19 GAGAAATGGGTCCAAAGTTTTGGGAGAATCAAGAAGATCGAGCGATGGTTGAGTCCACCA 78
Query 307 TAGGCTCTGAAGCTTGCGACTTTTTCATCTCAACAGCTTCAGCTTCCAACACTGCCTTGT 366
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 79 TAGGCTCTGAAGCTTGCGACTTTTTCATCTCAACGGCTTCAGCTTCCAACACTGCCTTGA 138
Query 367 CCAAGCTTGTCTCACCACCAAGTGATTCCAATCTCCAACAAGGGTTACGTCACGTTGTTG 426
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 CCAAGCTTGTCTCGCCGCCAAGTGATTCCAATCTCCAACAAGGGTTACGTCACGTTGTTG 198
Query 427 AAGGATCTGATTGGGATTATGCTCTTTTCTGGCTAGCGTCCAACGTTAATAGCTCTGATG 486
|||| |||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||
Sbjct 199 AAGGTTCTGATTGGGATTATGCTATTTTCTGGTTAGCTTCCAACGTTAATAGCTCCGATG 258
Query 487 GTTGTGTCTTGATCTGGGGAGATGGTCATTGCCGTGTCAAAAAGGGTGCTTCAGGTGAGG 546
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 259 GTTGTGTCTTGATCTGGGGAGATGGTCATTGCCGTGTCAAAAAGGGTGTTTCTGGTGAGG 318
Query 547 ATTACTCTCAGCAAGATGAGATCAAAAGACGTGTGCTTCGCAAGCTTCACTTGTCGTTCG 606
|||| || ||||||||||||| |||||| |||||||||||||||||||||||||| || |
Sbjct 319 ATTATTCGCAGCAAGATGAGACCAAAAGGCGTGTGCTTCGCAAGCTTCACTTGTCCTTTG 378
Query 607 TTGGTTCAGATGAAGATCATCGTTTGGTGAAATCAGGAGCTCTTACTGATCTCGACATGT 666
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTGGTTCAGATGAGGATCATCGTTTGGTGAAATCAGGAGCTCTTACTGATCTCGACATGT 438
Query 667 TTTATCTGGCTTCTTTGTACTTTTCCTTTAGGTGTGATACCAATAAGTACGGTCCTGCTG 726
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 439 TTTATCTGGCTTCTTTGTACTTTTCCTTTAGGTGTGATTCTAATAAGTACGGTCCTGCTG 498
Query 727 GAACCTATGTGTCTGGGAAGCCTCTTTGGGCTGCAGATTTGCCTAGCTGCTTGAGTTATT 786
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 499 GAACCTATGTGTCTGGGAAGCCTCTTTGGGCTGCTGACTTGCCTAGCTGCTTGAGTTATT 558
Query 787 ATAGGGTTAGGTCTTTCTTAGCTAGGTCAGCTGGTTTTCAGACTGTGTTGTCTGTACCAG 846
||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||
Sbjct 559 ATAGGGTTAGGTCTTTCTTGGCTAGATCTGCTGGGTTTCAGACTGTGTTGTCTGTACCAG 618
Query 847 TGAATTCTGGAGTTGTGGAGCTTGGTTCTTTAAGACATATTCCAGAAGATAAGAGTGTGA 906
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 619 TGAACTCTGGAGTTGTGGAGCTTGGTTCTTTGAGACATATTCCAGAAGATAAGAGTGTGA 678
Query 907 TTGAGATGGTGAAATCAGTGTTTGGTGGGTCTGACTTTGTTCAGGCTAAAGAAGCTCCTA 966
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 679 TTGAGATGGTGAAATCAGTGTTTGGTGGATCTGACTTTGTTCAGGCTAAAGAAGCTCCTA 738
Query 967 AAATCTTTGGTCGACAGCTGAGTCTTGGTGGAGCAAAACCTCGGTCTATGAGTATTAATT 1026
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 739 AAATCTTTGGTCGACAGCTGAGCCTTGGTGGATCGAAACCTCGGTCTATGAGTATTAATT 798
Query 1027 TCTCCCCGAAGACCGAGGATGACACGGGTTTCTCATTGGAATCGTATGAGGTGCAAGCGA 1086
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 799 TCTCCCCCAAGACGGAGGATGACACAGGTTTCTCATTGGAATCGTATGAGGTGCAAGCGA 858
Query 1087 TCGGAGGCTCTAATCAAGTGTATGGTTATGAGCAAGGGAAAGATGAGACATTGTATCTAA 1146
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TCGGAGGCTCCAATCAAGTGTATGGTTATGAGCAAGGGAAAGATGAGACATTGTATCTAA 918
Query 1147 CTGACGAGCAAAAGCCGAGGAAGAGAGGGAGAAAACCAGCAAATGGAAGAGAAGAGGCTC 1206
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CTGATGAGCAAAAGCCGAGGAAGAGAGGGAGAAAACCAGCAAATGGAAGAGAAGAGGCTT 978
Query 1207 TAAACCATGTGGAAGCGGAACGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCTT 1266
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 979 TGAACCATGTGGAAGCGGAACGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCAT 1038
Query 1267 TGAGAGCGGTGGTGCCTAACATCTCCAAGATGGACAAGGCTTCGCTCCTTGCAGACGCAA 1326
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 1039 TGAGAGCGGTGGTGCCTAACATCTCTAAGATGGACAAGGCTTCGCTCCTTGCGGATGCAA 1098
Query 1327 TCACTTACATCACGGATATGCAGAAGAAAATCAGGGTGTATGAAACAGAGAAGCAGATAA 1386
|||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1099 TCACATACATCACAGATATGCAGAAGAAAATCAGGGTATACGAAACAGAGAAGCAGATAA 1158
Query 1387 TGAAGAGGAGGGAGAGTAATCAGATAACTCCAGCAGAGGTTGATTATCAACAGAGGCATG 1446
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1159 TGAAGAGGAGGGAGAGTAATCAGATAACTCCAGCAGAGGTTGATTATCAACAAAGGCAGG 1218
Query 1447 ATGATGCAGTTGTAAGGCTAAGCTGTCCGTTGGAAACTCATCCAGTTTCAAAGGTGATAC 1506
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1219 ATGATGCAGTGGTAAGGCTAAGCTGTCCGTTGGAAACTCATCCCGTTTCAAAGGTGATAC 1278
Query 1507 AAACGTTGAGGGAGAATGAAGTTATGCCTCATGATTCCAACGTGGCCATCACAGAGGAGG 1566
|||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||||
Sbjct 1279 AAACGTTGAGAGAGAATGAAGTTATGCCTCATGACTCTAATGTGGCTGTCACAGAGGAGG 1338
Query 1567 GTGTGGTTCACACATTCACTCTCCGGCCTCAGGGTGGCTGCACCGCTGAGCAGTTGAAGG 1626
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1339 GTGTGGTTCACACATTCACTCTCCGGCCTCAGGGTGGCTGCACCGCCGAGCAGTTGAAGG 1398
Query 1627 ACAAGCTCCTTGCCTCTCTATCACAGTAACT 1657
|||||||||||||||||||||||||||||||
Sbjct 1399 ACAAGCTCCTTGCCTCTCTATCACAGTAACT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68752892225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5