BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16444.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493236 jgi|Araly1|493236|fgenesh2_kg.7__2669__AT4G16444.1 1190 0.0
> Ahg493236 jgi|Araly1|493236|fgenesh2_kg.7__2669__AT4G16444.1
Length=934
Score = 1190 bits (644), Expect = 0.0
Identities = 728/769 (95%), Gaps = 3/769 (0%)
Strand=Plus/Plus
Query 8 CAATTTCAGACGTTAACCTCGGCTTGAAGGCTTCAAATTTCTGTGAATCCACGACGGAGA 67
|||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1 CAATTTTAGACGTTAACCTCCGCTTGAAGGCTTGAAATTTCTGTGAATCTACGACGGAGA 60
Query 68 TTATTGGTGAATTACGTTAGAATCAGTAATCAGCAAAAGGGTTAATGGAAGGAGAGAAGC 127
|||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 61 CTATTGGTGAATTACATCAGAATCAGTAATCAGCGAAAGGG-TAATGGAAGGAGAGAAGC 119
Query 128 TTATAGAAGATCGCGGCTTTTTGGCTGCTCCTCTGACCTTCGTCGTCGTCGTTGTCTTCC 187
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 TAATAGAAGATCGCGGCTTTTTGGCTGCTCCTCTGACCTTCTTCGTCGTCGTTGTCTTCC 179
Query 188 AATTGCTATCCAAGTGGCTTGACCAATTGAAGAAGAAAGGGTCGAAGAACACGAGGGAAT 247
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AATTGCTATCTAAGTGGCTTGACCAATTGAAGAAGAAAGGGTCGAAGAACACGAGGGAAT 239
Query 248 CAGAGCTGCGAACCGAAATTAAGCAGCTTTTGAGAGAGGCTAGTGCATTGTCTCAGCCAG 307
||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 240 CAGAGCTACGATCTGAAATTAAGCAGCTTTTGAGAGAGGCTAGTGTATTGTCTCAGCCTG 299
Query 308 CCACATTTGCGCAAGCAGCGAAACTTAGGAGGTCAGCAGCTACTAAAGAGAAAGAACTTG 367
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCACGTTTGCGCAAGCAGCAAAACTTAGGAGGTCAGCAGCTACTAAAGAGAAAGAACTTG 359
Query 368 CACAATATCTGGAGCAGCATCACAAAGAAATCAAGCTTTCATACGATATGTATGGGAAGG 427
|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||
Sbjct 360 CACAATATCTGGAGCAGCATAACAAAGAAATAAAGCTGTCATACGATATGTATGGAAAGG 419
Query 428 GTCTGCTTGCTTCGAAGGTTGTGATATACCTAATCTTGGTATTGTGCTTCTGGAGGACTC 487
| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TTTTACTTGCTTCAAAGGTTGTGATATACCTAATCTTGGTATTGTGTTTCTGGAGGACTC 479
Query 488 CAATTGCCATTATCGCTAAGCAACTTGTTCAACCGTTTGGGACTTTGTTATCTTGGGGAA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAATTGCCATTATCGCTAAGCAACTTGTTCAACCGTTTGGGACTTTGTTATCTTGGGGAA 539
Query 548 CAGGAGGTCACATGACAGGCCATGTAATGGTCGGGATCATACCGTGGCTCATACTCTCAA 607
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 CAGGAGGTCACTTGACAGGCCATGTAATGGTCGGGATCATACCGTGGCTGATACTCTCAA 599
Query 608 ACAGAGTGAGCAAATATGTGTGTAGGTTCGTGGAGTTCTAAATCGCATCCCTGAAAAGAG 667
|||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 600 CCAGAGTAAGCAAATATGTGTGTAGGTTCGTGGAGTTCTAAATCACAGCCCTGAAAAGAG 659
Query 668 TGAAGATTGGATGGTTTTTGAGTTCAAAGTTGTAGCCTTTTAGGAGACACTTGTGGCAGA 727
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TGGAGATTGGATGGTTTT-GAGTTCAAAGTTGTAGCGTTTTAGGAGACACTTGTGGCAGA 718
Query 728 AATTGTGCTTCTCTTTTTGTTCCTAATCTTCC-TTAACAATGTATATTT 775
|| ||||| ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 719 AACTGTGCCTCTCTTTTTTTTCCTAATCTTCCCTTAACAATGTATATTT 767
Score = 115 bits (62), Expect = 6e-25
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 928 TAC-GTGTTGTCAATTTTTATCTTGTAACACCGACTTTGTAAAATCAGATTCTAAAGACG 986
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 866 TACAGTGTTGTCAATTTTTATCTTGTAACACCGACTTTGTAAAATCAGATTCAAAAGACG 925
Query 987 CGTGTACTT 995
|||||||||
Sbjct 926 CGTGTACTT 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5